Cluster: SPMP28_bin.12_CGC44
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 9
- Substrate:
- Genome ID: SPMP28_bin.12
- CGC Family ID: CGCFAM_05890
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_254441 | opera_contig_254441_180 | 200974 | 204195 | - | GH38 |
| CAZyme | opera_contig_254441 | opera_contig_254441_181 | 204354 | 206213 | - | GH127 |
| CAZyme | opera_contig_254441 | opera_contig_254441_182 | 206252 | 207880 | - | CBM91 | GH43_12 |
| TF | opera_contig_254441 | opera_contig_254441_183 | 207925 | 211911 | - | HTH_AraC |
| CAZyme | opera_contig_254441 | opera_contig_254441_184 | 211958 | 213493 | - | GH28 |
| CAZyme | opera_contig_254441 | opera_contig_254441_185 | 213505 | 214974 | - | GH28 |
| CAZyme | opera_contig_254441 | opera_contig_254441_186 | 215001 | 217742 | - | GH106 |
| CAZyme | opera_contig_254441 | opera_contig_254441_187 | 217755 | 220481 | - | GH106 |
| pfam | opera_contig_254441 | opera_contig_254441_188 | 220642 | 222138 | - | SusD-like | SusD-like | SusD-like_2 |
| TC | opera_contig_254441 | opera_contig_254441_189 | 222165 | 225278 | - | 1.B.14.6.2 |
| pfam | opera_contig_254441 | opera_contig_254441_190 | 225314 | 227233 | - | Fib_succ_major | BACON | BACON_2 |
| CAZyme | opera_contig_254441 | opera_contig_254441_191 | 227647 | 229710 | + | GH127 |
| CAZyme | opera_contig_254441 | opera_contig_254441_192 | 229753 | 231906 | + | GH3 |
Gene ID: opera_contig_254441_180
Type: CAZyme
Location: 200974 - 204195 (-)
Type: CAZyme
Location: 200974 - 204195 (-)
Gene ID: opera_contig_254441_181
Type: CAZyme
Location: 204354 - 206213 (-)
Type: CAZyme
Location: 204354 - 206213 (-)
Gene ID: opera_contig_254441_182
Type: CAZyme
Location: 206252 - 207880 (-)
Type: CAZyme
Location: 206252 - 207880 (-)
Gene ID: opera_contig_254441_183
Type: TF
Location: 207925 - 211911 (-)
Type: TF
Location: 207925 - 211911 (-)
Gene ID: opera_contig_254441_184
Type: CAZyme
Location: 211958 - 213493 (-)
Type: CAZyme
Location: 211958 - 213493 (-)
Gene ID: opera_contig_254441_185
Type: CAZyme
Location: 213505 - 214974 (-)
Type: CAZyme
Location: 213505 - 214974 (-)
Gene ID: opera_contig_254441_186
Type: CAZyme
Location: 215001 - 217742 (-)
Type: CAZyme
Location: 215001 - 217742 (-)
Gene ID: opera_contig_254441_187
Type: CAZyme
Location: 217755 - 220481 (-)
Type: CAZyme
Location: 217755 - 220481 (-)
Gene ID: opera_contig_254441_188
Type: pfam
Location: 220642 - 222138 (-)
Type: pfam
Location: 220642 - 222138 (-)
Gene ID: opera_contig_254441_189
Type: TC
Location: 222165 - 225278 (-)
Type: TC
Location: 222165 - 225278 (-)
Gene ID: opera_contig_254441_190
Type: pfam
Location: 225314 - 227233 (-)
Type: pfam
Location: 225314 - 227233 (-)
Gene ID: opera_contig_254441_191
Type: CAZyme
Location: 227647 - 229710 (+)
Type: CAZyme
Location: 227647 - 229710 (+)
Gene ID: opera_contig_254441_192
Type: CAZyme
Location: 229753 - 231906 (+)
Type: CAZyme
Location: 229753 - 231906 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides propionicigenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.