Cluster: SPMP28_bin.12_CGC28
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: SPMP28_bin.12
- CGC Family ID: CGCFAM_09038
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_254439 | opera_contig_254439_1318 | 1629147 | 1629830 | + | 2.A.21.5.6 |
| pfam | opera_contig_254439 | opera_contig_254439_1319 | 1629902 | 1630432 | + | DUF386 |
| NULL(UNKNOWN) | opera_contig_254439 | opera_contig_254439_1320 | 1630460 | 1630573 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_254439 | opera_contig_254439_1321 | 1630647 | 1633772 | + | 1.B.14.6.1 |
| pfam | opera_contig_254439 | opera_contig_254439_1322 | 1633786 | 1635570 | + | SusD_RagB | SusD-like_3 |
| TC | opera_contig_254439 | opera_contig_254439_1323 | 1635602 | 1638631 | + | 1.B.14.6.1 |
| pfam | opera_contig_254439 | opera_contig_254439_1324 | 1638661 | 1640388 | + | SusD_RagB | SusD-like_3 |
| pfam | opera_contig_254439 | opera_contig_254439_1325 | 1640438 | 1641391 | + | BT_3987-like_N | BT_3044-like_C |
| CAZyme | opera_contig_254439 | opera_contig_254439_1326 | 1641404 | 1642840 | + | CE20 |
| sulfatase | opera_contig_254439 | opera_contig_254439_1327 | 1642854 | 1644398 | + | S1_7 |
| sulfatase | opera_contig_254439 | opera_contig_254439_1328 | 1644395 | 1646458 | + | S1_7 |
| CAZyme | opera_contig_254439 | opera_contig_254439_1329 | 1646600 | 1650016 | - | GH35 | GH43_24 |
Gene ID: opera_contig_254439_1318
Type: TC
Location: 1629147 - 1629830 (+)
Type: TC
Location: 1629147 - 1629830 (+)
Gene ID: opera_contig_254439_1319
Type: pfam
Location: 1629902 - 1630432 (+)
Type: pfam
Location: 1629902 - 1630432 (+)
Gene ID: opera_contig_254439_1320
Type:
Location: 1630460 - 1630573 (+)
Type:
Location: 1630460 - 1630573 (+)
Gene ID: opera_contig_254439_1321
Type: TC
Location: 1630647 - 1633772 (+)
Type: TC
Location: 1630647 - 1633772 (+)
Gene ID: opera_contig_254439_1322
Type: pfam
Location: 1633786 - 1635570 (+)
Type: pfam
Location: 1633786 - 1635570 (+)
Gene ID: opera_contig_254439_1323
Type: TC
Location: 1635602 - 1638631 (+)
Type: TC
Location: 1635602 - 1638631 (+)
Gene ID: opera_contig_254439_1324
Type: pfam
Location: 1638661 - 1640388 (+)
Type: pfam
Location: 1638661 - 1640388 (+)
Gene ID: opera_contig_254439_1325
Type: pfam
Location: 1640438 - 1641391 (+)
Type: pfam
Location: 1640438 - 1641391 (+)
Gene ID: opera_contig_254439_1326
Type: CAZyme
Location: 1641404 - 1642840 (+)
Type: CAZyme
Location: 1641404 - 1642840 (+)
Gene ID: opera_contig_254439_1327
Type: sulfatase
Location: 1642854 - 1644398 (+)
Type: sulfatase
Location: 1642854 - 1644398 (+)
Gene ID: opera_contig_254439_1328
Type: sulfatase
Location: 1644395 - 1646458 (+)
Type: sulfatase
Location: 1644395 - 1646458 (+)
Gene ID: opera_contig_254439_1329
Type: CAZyme
Location: 1646600 - 1650016 (-)
Type: CAZyme
Location: 1646600 - 1650016 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides propionicigenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.