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Cluster: SPMP28_bin.12_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme opera_contig_254439 opera_contig_254439_1271 1558560 1561142 + GH31_4
CAZyme opera_contig_254439 opera_contig_254439_1272 1561255 1563372 + GH43_35
CAZyme opera_contig_254439 opera_contig_254439_1273 1563488 1565188 + GH97
pfam opera_contig_254439 opera_contig_254439_1274 1565131 1565430 + GH97_C
pfam opera_contig_254439 opera_contig_254439_1275 1565625 1566155 + Sua5_yciO_yrdC
TC opera_contig_254439 opera_contig_254439_1276 1566161 1567951 + 2.A.49.6.1
pfam opera_contig_254439 opera_contig_254439_1277 1567963 1568931 + Formyl_trans_N | Formyl_trans_C
pfam opera_contig_254439 opera_contig_254439_1278 1569250 1569900 + Ribul_P_3_epim
TC opera_contig_254439 opera_contig_254439_1279 1569952 1572006 + 3.A.11.1.1
Gene ID: opera_contig_254439_1271
Type: CAZyme
Location: 1558560 - 1561142 (+)
Gene ID: opera_contig_254439_1272
Type: CAZyme
Location: 1561255 - 1563372 (+)
Gene ID: opera_contig_254439_1273
Type: CAZyme
Location: 1563488 - 1565188 (+)
Gene ID: opera_contig_254439_1274
Type: pfam
Location: 1565131 - 1565430 (+)
Gene ID: opera_contig_254439_1275
Type: pfam
Location: 1565625 - 1566155 (+)
Gene ID: opera_contig_254439_1276
Type: TC
Location: 1566161 - 1567951 (+)
Gene ID: opera_contig_254439_1277
Type: pfam
Location: 1567963 - 1568931 (+)
Gene ID: opera_contig_254439_1278
Type: pfam
Location: 1569250 - 1569900 (+)
Gene ID: opera_contig_254439_1279
Type: TC
Location: 1569952 - 1572006 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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