Cluster: SPMP28_bin.12_CGC22
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 7
- Substrate: pectin
- Genome ID: SPMP28_bin.12
- CGC Family ID: CGCFAM_00298
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_254439 | opera_contig_254439_1073 | 1305256 | 1309131 | - | GH2 | GH43_19 |
| CAZyme | opera_contig_254439 | opera_contig_254439_1074 | 1309327 | 1311849 | + | CE20 | GH105 |
| CAZyme | opera_contig_254439 | opera_contig_254439_1075 | 1311857 | 1314646 | + | GH106 |
| CAZyme | opera_contig_254439 | opera_contig_254439_1076 | 1314643 | 1316478 | + | PL11 |
| CAZyme | opera_contig_254439 | opera_contig_254439_1077 | 1316537 | 1318057 | + | GH28 |
| pfam | opera_contig_254439 | opera_contig_254439_1078 | 1318189 | 1319655 | + | FGGY_N | FGGY_C |
| pfam | opera_contig_254439 | opera_contig_254439_1079 | 1319682 | 1320935 | + | RhaA |
| TC | opera_contig_254439 | opera_contig_254439_1080 | 1321027 | 1322058 | + | 2.A.7.6.1 |
| pfam | opera_contig_254439 | opera_contig_254439_1081 | 1322092 | 1322901 | + | Aldolase_II |
| pfam | opera_contig_254439 | opera_contig_254439_1082 | 1322926 | 1324071 | + | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| CAZyme | opera_contig_254439 | opera_contig_254439_1083 | 1324091 | 1325413 | + | GH105 |
| TF | opera_contig_254439 | opera_contig_254439_1084 | 1325558 | 1326478 | + | HTH_AraC |
| TC | opera_contig_254439 | opera_contig_254439_1085 | 1327036 | 1330284 | + | 1.B.14.6.1 |
| TC | opera_contig_254439 | opera_contig_254439_1086 | 1330300 | 1332222 | + | 8.A.46.1.3 |
| CAZyme | opera_contig_254439 | opera_contig_254439_1087 | 1332306 | 1333598 | + | PL1_2 |
Gene ID: opera_contig_254439_1073
Type: CAZyme
Location: 1305256 - 1309131 (-)
Type: CAZyme
Location: 1305256 - 1309131 (-)
Gene ID: opera_contig_254439_1074
Type: CAZyme
Location: 1309327 - 1311849 (+)
Type: CAZyme
Location: 1309327 - 1311849 (+)
Gene ID: opera_contig_254439_1075
Type: CAZyme
Location: 1311857 - 1314646 (+)
Type: CAZyme
Location: 1311857 - 1314646 (+)
Gene ID: opera_contig_254439_1076
Type: CAZyme
Location: 1314643 - 1316478 (+)
Type: CAZyme
Location: 1314643 - 1316478 (+)
Gene ID: opera_contig_254439_1077
Type: CAZyme
Location: 1316537 - 1318057 (+)
Type: CAZyme
Location: 1316537 - 1318057 (+)
Gene ID: opera_contig_254439_1078
Type: pfam
Location: 1318189 - 1319655 (+)
Type: pfam
Location: 1318189 - 1319655 (+)
Gene ID: opera_contig_254439_1079
Type: pfam
Location: 1319682 - 1320935 (+)
Type: pfam
Location: 1319682 - 1320935 (+)
Gene ID: opera_contig_254439_1080
Type: TC
Location: 1321027 - 1322058 (+)
Type: TC
Location: 1321027 - 1322058 (+)
Gene ID: opera_contig_254439_1081
Type: pfam
Location: 1322092 - 1322901 (+)
Type: pfam
Location: 1322092 - 1322901 (+)
Gene ID: opera_contig_254439_1082
Type: pfam
Location: 1322926 - 1324071 (+)
Type: pfam
Location: 1322926 - 1324071 (+)
Gene ID: opera_contig_254439_1083
Type: CAZyme
Location: 1324091 - 1325413 (+)
Type: CAZyme
Location: 1324091 - 1325413 (+)
Gene ID: opera_contig_254439_1084
Type: TF
Location: 1325558 - 1326478 (+)
Type: TF
Location: 1325558 - 1326478 (+)
Gene ID: opera_contig_254439_1085
Type: TC
Location: 1327036 - 1330284 (+)
Type: TC
Location: 1327036 - 1330284 (+)
Gene ID: opera_contig_254439_1086
Type: TC
Location: 1330300 - 1332222 (+)
Type: TC
Location: 1330300 - 1332222 (+)
Gene ID: opera_contig_254439_1087
Type: CAZyme
Location: 1332306 - 1333598 (+)
Type: CAZyme
Location: 1332306 - 1333598 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides propionicigenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.