Cluster: SPMP28_bin.12_CGC20
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 8
- Substrate: xylan
- Genome ID: SPMP28_bin.12
- CGC Family ID: CGCFAM_00239
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_254439 | opera_contig_254439_943 | 1162400 | 1163851 | - | GH43_7 | GH43_7 |
| NULL(UNKNOWN) | opera_contig_254439 | opera_contig_254439_944 | 1163854 | 1164552 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | opera_contig_254439 | opera_contig_254439_945 | 1164580 | 1165740 | - | CE1 |
| CAZyme | opera_contig_254439 | opera_contig_254439_946 | 1165790 | 1166920 | - | CE1 |
| CAZyme | opera_contig_254439 | opera_contig_254439_947 | 1167147 | 1168280 | + | CE1 |
| CAZyme | opera_contig_254439 | opera_contig_254439_948 | 1168301 | 1169455 | + | CE1 |
| TF | opera_contig_254439 | opera_contig_254439_949 | 1169682 | 1173470 | + | HTH_AraC |
| pfam | opera_contig_254439 | opera_contig_254439_950 | 1173585 | 1175255 | - | SusD_RagB | SusD-like_3 |
| TC | opera_contig_254439 | opera_contig_254439_951 | 1175304 | 1178444 | - | 1.B.14.6.1 |
| CAZyme | opera_contig_254439 | opera_contig_254439_952 | 1178662 | 1179666 | - | GH43_29 |
| CAZyme | opera_contig_254439 | opera_contig_254439_953 | 1179819 | 1182263 | - | GH9 |
| CAZyme | opera_contig_254439 | opera_contig_254439_954 | 1182305 | 1183633 | - | CBM6 | GH43_2 |
Gene ID: opera_contig_254439_943
Type: CAZyme
Location: 1162400 - 1163851 (-)
Type: CAZyme
Location: 1162400 - 1163851 (-)
Gene ID: opera_contig_254439_944
Type:
Location: 1163854 - 1164552 (-)
Type:
Location: 1163854 - 1164552 (-)
Gene ID: opera_contig_254439_945
Type: CAZyme
Location: 1164580 - 1165740 (-)
Type: CAZyme
Location: 1164580 - 1165740 (-)
Gene ID: opera_contig_254439_946
Type: CAZyme
Location: 1165790 - 1166920 (-)
Type: CAZyme
Location: 1165790 - 1166920 (-)
Gene ID: opera_contig_254439_947
Type: CAZyme
Location: 1167147 - 1168280 (+)
Type: CAZyme
Location: 1167147 - 1168280 (+)
Gene ID: opera_contig_254439_948
Type: CAZyme
Location: 1168301 - 1169455 (+)
Type: CAZyme
Location: 1168301 - 1169455 (+)
Gene ID: opera_contig_254439_949
Type: TF
Location: 1169682 - 1173470 (+)
Type: TF
Location: 1169682 - 1173470 (+)
Gene ID: opera_contig_254439_950
Type: pfam
Location: 1173585 - 1175255 (-)
Type: pfam
Location: 1173585 - 1175255 (-)
Gene ID: opera_contig_254439_951
Type: TC
Location: 1175304 - 1178444 (-)
Type: TC
Location: 1175304 - 1178444 (-)
Gene ID: opera_contig_254439_952
Type: CAZyme
Location: 1178662 - 1179666 (-)
Type: CAZyme
Location: 1178662 - 1179666 (-)
Gene ID: opera_contig_254439_953
Type: CAZyme
Location: 1179819 - 1182263 (-)
Type: CAZyme
Location: 1179819 - 1182263 (-)
Gene ID: opera_contig_254439_954
Type: CAZyme
Location: 1182305 - 1183633 (-)
Type: CAZyme
Location: 1182305 - 1183633 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides propionicigenes
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.