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Cluster: SPMP28_bin.12_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC opera_contig_254439 opera_contig_254439_25 28478 29122 + 3.A.1.12.5
NULL(UNKNOWN) opera_contig_254439 opera_contig_254439_26 29146 30354 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme opera_contig_254439 opera_contig_254439_27 30627 32021 - GH28
CAZyme opera_contig_254439 opera_contig_254439_28 32035 34788 - PL40
TF opera_contig_254439 opera_contig_254439_29 34881 38966 - HTH_AraC
TC opera_contig_254439 opera_contig_254439_30 39410 42475 + 1.B.14.6.1
pfam opera_contig_254439 opera_contig_254439_31 42491 44440 + SusD_RagB | SusD-like_3
CAZyme opera_contig_254439 opera_contig_254439_32 44538 46997 + GH115
CAZyme opera_contig_254439 opera_contig_254439_33 47006 49015 + GH67
CAZyme opera_contig_254439 opera_contig_254439_34 49167 50276 - GH10
CAZyme opera_contig_254439 opera_contig_254439_35 50331 52205 - CE20 | CE20
NULL(UNKNOWN) opera_contig_254439 opera_contig_254439_36 52395 52517 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme opera_contig_254439 opera_contig_254439_37 52566 54356 + GH35
CAZyme opera_contig_254439 opera_contig_254439_38 54415 56049 + CE20 | CE20
TC opera_contig_254439 opera_contig_254439_39 56093 57589 + 2.A.2.3.4
CAZyme opera_contig_254439 opera_contig_254439_40 57614 60379 + CBM91 | GH10 | GH43_12
CAZyme opera_contig_254439 opera_contig_254439_41 60428 61399 + GH43_1
CAZyme opera_contig_254439 opera_contig_254439_42 61412 63415 + GH67
NULL(UNKNOWN) opera_contig_254439 opera_contig_254439_43 63440 63553 + NULL(UNKNOWN)
[View Structural Homologs]
TC opera_contig_254439 opera_contig_254439_44 63575 65434 - 2.A.47.4.8
TF opera_contig_254439 opera_contig_254439_45 65586 69677 + HTH_AraC
CAZyme opera_contig_254439 opera_contig_254439_46 69756 72335 - GH115
CAZyme opera_contig_254439 opera_contig_254439_47 72348 73937 - CBM91 | GH43_10
CAZyme opera_contig_254439 opera_contig_254439_48 73964 77215 - CE6 | GH95
CAZyme opera_contig_254439 opera_contig_254439_49 77240 79684 - CE15 | GH8
CAZyme opera_contig_254439 opera_contig_254439_50 79727 81676 - GH97
TF opera_contig_254439 opera_contig_254439_51 81919 85029 + HTH_AraC
CAZyme opera_contig_254439 opera_contig_254439_52 85139 86509 + CBM6 | GH43_29
CAZyme opera_contig_254439 opera_contig_254439_53 86536 88989 + GH31_4
CAZyme opera_contig_254439 opera_contig_254439_54 89095 91695 - GH2
CAZyme opera_contig_254439 opera_contig_254439_55 91721 94111 - CBM91 | GH43_10
CAZyme opera_contig_254439 opera_contig_254439_56 94156 95304 - CE1
NULL(UNKNOWN) opera_contig_254439 opera_contig_254439_57 95892 96134 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme opera_contig_254439 opera_contig_254439_58 96161 97804 - GH30_8
CAZyme opera_contig_254439 opera_contig_254439_59 97808 100024 - GH10
pfam opera_contig_254439 opera_contig_254439_60 100055 101137 - BT_3987-like_N | DUF5627
pfam opera_contig_254439 opera_contig_254439_61 101128 102882 - SusD_RagB | SusD-like_3
TC opera_contig_254439 opera_contig_254439_62 102903 105722 - 1.B.14.6.1
pfam opera_contig_254439 opera_contig_254439_63 105752 107623 - SusD_RagB | SusD-like_3
TC opera_contig_254439 opera_contig_254439_64 107635 110784 - 1.B.14.6.1
CAZyme opera_contig_254439 opera_contig_254439_65 111052 112785 - CBM91 | GH43_12
Gene ID: opera_contig_254439_25
Type: TC
Location: 28478 - 29122 (+)
Gene ID: opera_contig_254439_26
Type:
Location: 29146 - 30354 (+)
Gene ID: opera_contig_254439_27
Type: CAZyme
Location: 30627 - 32021 (-)
Gene ID: opera_contig_254439_28
Type: CAZyme
Location: 32035 - 34788 (-)
Gene ID: opera_contig_254439_29
Type: TF
Location: 34881 - 38966 (-)
Gene ID: opera_contig_254439_30
Type: TC
Location: 39410 - 42475 (+)
Gene ID: opera_contig_254439_31
Type: pfam
Location: 42491 - 44440 (+)
Gene ID: opera_contig_254439_32
Type: CAZyme
Location: 44538 - 46997 (+)
Gene ID: opera_contig_254439_33
Type: CAZyme
Location: 47006 - 49015 (+)
Gene ID: opera_contig_254439_34
Type: CAZyme
Location: 49167 - 50276 (-)
Gene ID: opera_contig_254439_35
Type: CAZyme
Location: 50331 - 52205 (-)
Gene ID: opera_contig_254439_36
Type:
Location: 52395 - 52517 (+)
Gene ID: opera_contig_254439_37
Type: CAZyme
Location: 52566 - 54356 (+)
Gene ID: opera_contig_254439_38
Type: CAZyme
Location: 54415 - 56049 (+)
Gene ID: opera_contig_254439_39
Type: TC
Location: 56093 - 57589 (+)
Gene ID: opera_contig_254439_40
Type: CAZyme
Location: 57614 - 60379 (+)
Gene ID: opera_contig_254439_41
Type: CAZyme
Location: 60428 - 61399 (+)
Gene ID: opera_contig_254439_42
Type: CAZyme
Location: 61412 - 63415 (+)
Gene ID: opera_contig_254439_43
Type:
Location: 63440 - 63553 (+)
Gene ID: opera_contig_254439_44
Type: TC
Location: 63575 - 65434 (-)
Gene ID: opera_contig_254439_45
Type: TF
Location: 65586 - 69677 (+)
Gene ID: opera_contig_254439_46
Type: CAZyme
Location: 69756 - 72335 (-)
Gene ID: opera_contig_254439_47
Type: CAZyme
Location: 72348 - 73937 (-)
Gene ID: opera_contig_254439_48
Type: CAZyme
Location: 73964 - 77215 (-)
Gene ID: opera_contig_254439_49
Type: CAZyme
Location: 77240 - 79684 (-)
Gene ID: opera_contig_254439_50
Type: CAZyme
Location: 79727 - 81676 (-)
Gene ID: opera_contig_254439_51
Type: TF
Location: 81919 - 85029 (+)
Gene ID: opera_contig_254439_52
Type: CAZyme
Location: 85139 - 86509 (+)
Gene ID: opera_contig_254439_53
Type: CAZyme
Location: 86536 - 88989 (+)
Gene ID: opera_contig_254439_54
Type: CAZyme
Location: 89095 - 91695 (-)
Gene ID: opera_contig_254439_55
Type: CAZyme
Location: 91721 - 94111 (-)
Gene ID: opera_contig_254439_56
Type: CAZyme
Location: 94156 - 95304 (-)
Gene ID: opera_contig_254439_57
Type:
Location: 95892 - 96134 (+)
Gene ID: opera_contig_254439_58
Type: CAZyme
Location: 96161 - 97804 (-)
Gene ID: opera_contig_254439_59
Type: CAZyme
Location: 97808 - 100024 (-)
Gene ID: opera_contig_254439_60
Type: pfam
Location: 100055 - 101137 (-)
Gene ID: opera_contig_254439_61
Type: pfam
Location: 101128 - 102882 (-)
Gene ID: opera_contig_254439_62
Type: TC
Location: 102903 - 105722 (-)
Gene ID: opera_contig_254439_63
Type: pfam
Location: 105752 - 107623 (-)
Gene ID: opera_contig_254439_64
Type: TC
Location: 107635 - 110784 (-)
Gene ID: opera_contig_254439_65
Type: CAZyme
Location: 111052 - 112785 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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