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Cluster: SPMP19_bin.54_CGC34

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC opera_contig_160022 opera_contig_160022_4 2462 3748 + 2.A.115.2.14
pfam opera_contig_160022 opera_contig_160022_5 4253 4672 + Glyco_hydro_1
TF opera_contig_160022 opera_contig_160022_6 4777 5634 - HTH_AraC
TC opera_contig_160022 opera_contig_160022_7 5785 7155 + 2.A.2.3.3
CAZyme opera_contig_160022 opera_contig_160022_8 7172 8350 + GH5_44
CAZyme opera_contig_160022 opera_contig_160022_9 8352 9998 + CBM91 | GH43_11
TC opera_contig_160022 opera_contig_160022_10 10172 11578 + 2.A.66.1.28
Gene ID: opera_contig_160022_4
Type: TC
Location: 2462 - 3748 (+)
Gene ID: opera_contig_160022_5
Type: pfam
Location: 4253 - 4672 (+)
Gene ID: opera_contig_160022_6
Type: TF
Location: 4777 - 5634 (-)
Gene ID: opera_contig_160022_7
Type: TC
Location: 5785 - 7155 (+)
Gene ID: opera_contig_160022_8
Type: CAZyme
Location: 7172 - 8350 (+)
Gene ID: opera_contig_160022_9
Type: CAZyme
Location: 8352 - 9998 (+)
Gene ID: opera_contig_160022_10
Type: TC
Location: 10172 - 11578 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
opera_contig_160022_6 vegan > omnivore 1.75821 0.01389
opera_contig_160022_7 vegan > omnivore 2.37515 0.01389
opera_contig_160022_7 vegetarian > omnivore 1.87768 0.01882
opera_contig_160022_8 vegan > omnivore 1.84521 0.01389
opera_contig_160022_9 vegan > omnivore 1.56514 0.01389
opera_contig_160022_9 vegetarian > omnivore 1.09111 0.04743

🧭 Explore Read Mapping of CGC

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