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Cluster: SPMP19_bin.54_CGC24

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC opera_contig_160013 opera_contig_160013_49 55683 57056 - 2.A.22.5.3
TF opera_contig_160013 opera_contig_160013_50 57240 58847 - HTH_AraC | HTH_AraC
TC opera_contig_160013 opera_contig_160013_51 58849 60654 - 9.B.33.1.1
STP opera_contig_160013 opera_contig_160013_52 60867 62174 + SBP_bac_1
TC opera_contig_160013 opera_contig_160013_53 62234 63106 + 3.A.1.1.25
TC opera_contig_160013 opera_contig_160013_54 63103 63945 + 3.A.1.1.18
CAZyme opera_contig_160013 opera_contig_160013_55 63955 66123 + GH2
Gene ID: opera_contig_160013_49
Type: TC
Location: 55683 - 57056 (-)
Gene ID: opera_contig_160013_50
Type: TF
Location: 57240 - 58847 (-)
Gene ID: opera_contig_160013_51
Type: TC
Location: 58849 - 60654 (-)
Gene ID: opera_contig_160013_52
Type: STP
Location: 60867 - 62174 (+)
Gene ID: opera_contig_160013_53
Type: TC
Location: 62234 - 63106 (+)
Gene ID: opera_contig_160013_54
Type: TC
Location: 63103 - 63945 (+)
Gene ID: opera_contig_160013_55
Type: CAZyme
Location: 63955 - 66123 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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