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Cluster: SPMP19_bin.54_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC opera_contig_160010 opera_contig_160010_187 217627 218886 - 3.D.10.1.4
pfam opera_contig_160010 opera_contig_160010_188 218960 219865 - NadA
pfam opera_contig_160010 opera_contig_160010_189 220306 221226 - AP_endonuc_2
TC opera_contig_160010 opera_contig_160010_190 221223 223331 - 2.A.2.3.3
pfam opera_contig_160010 opera_contig_160010_191 223377 224210 - AP_endonuc_2
CAZyme opera_contig_160010 opera_contig_160010_192 224413 225417 - GH177
Gene ID: opera_contig_160010_187
Type: TC
Location: 217627 - 218886 (-)
Gene ID: opera_contig_160010_188
Type: pfam
Location: 218960 - 219865 (-)
Gene ID: opera_contig_160010_189
Type: pfam
Location: 220306 - 221226 (-)
Gene ID: opera_contig_160010_190
Type: TC
Location: 221223 - 223331 (-)
Gene ID: opera_contig_160010_191
Type: pfam
Location: 223377 - 224210 (-)
Gene ID: opera_contig_160010_192
Type: CAZyme
Location: 224413 - 225417 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
opera_contig_160010_189 vegan > omnivore 1.36046 0.01389
opera_contig_160010_190 vegan > omnivore 1.47457 0.01389
opera_contig_160010_190 vegetarian > omnivore 1.12901 0.04116
opera_contig_160010_191 vegan > omnivore 1.66953 0.01389
opera_contig_160010_191 vegetarian > omnivore 1.12443 0.04743
opera_contig_160010_192 vegan > omnivore 1.40123 0.01389

🧭 Explore Read Mapping of CGC

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