Cluster: SPMP17_bin.41_CGC6
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 3
- Substrate: host glycan
- Genome ID: SPMP17_bin.41
- CGC Family ID: CGCFAM_00243
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_2 | opera_contig_2_142 | 161435 | 161911 | + | 4.A.1.1.13 |
| TC | opera_contig_2 | opera_contig_2_143 | 161948 | 162640 | + | 4.A.1.1.7 |
| TC | opera_contig_2 | opera_contig_2_144 | 162585 | 162923 | + | 4.A.1.1.7 |
| TF | opera_contig_2 | opera_contig_2_145 | 163155 | 163886 | + | GntR |
| CAZyme | opera_contig_2 | opera_contig_2_146 | 164030 | 165199 | + | CE9 |
| pfam | opera_contig_2 | opera_contig_2_147 | 165232 | 165519 | + | DUF386 |
| NULL(UNKNOWN) | opera_contig_2 | opera_contig_2_148 | 165476 | 165616 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | opera_contig_2 | opera_contig_2_149 | 166192 | 167988 | + | GH35 |
| TC | opera_contig_2 | opera_contig_2_150 | 167991 | 168455 | + | 4.A.6.1.18 |
| TC | opera_contig_2 | opera_contig_2_151 | 168549 | 169436 | + | 4.A.6.1.18 |
| TC | opera_contig_2 | opera_contig_2_152 | 169426 | 170265 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | opera_contig_2 | opera_contig_2_153 | 170454 | 171077 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_2 | opera_contig_2_154 | 171159 | 171587 | + | 4.A.6.1.8 |
| TF | opera_contig_2 | opera_contig_2_155 | 171675 | 172409 | + | GntR |
| STP | opera_contig_2 | opera_contig_2_156 | 172521 | 173687 | + | SIS | SIS |
| CAZyme | opera_contig_2 | opera_contig_2_157 | 173803 | 174972 | + | CE9 |
Gene ID: opera_contig_2_142
Type: TC
Location: 161435 - 161911 (+)
Type: TC
Location: 161435 - 161911 (+)
Gene ID: opera_contig_2_143
Type: TC
Location: 161948 - 162640 (+)
Type: TC
Location: 161948 - 162640 (+)
Gene ID: opera_contig_2_144
Type: TC
Location: 162585 - 162923 (+)
Type: TC
Location: 162585 - 162923 (+)
Gene ID: opera_contig_2_145
Type: TF
Location: 163155 - 163886 (+)
Type: TF
Location: 163155 - 163886 (+)
Gene ID: opera_contig_2_146
Type: CAZyme
Location: 164030 - 165199 (+)
Type: CAZyme
Location: 164030 - 165199 (+)
Gene ID: opera_contig_2_147
Type: pfam
Location: 165232 - 165519 (+)
Type: pfam
Location: 165232 - 165519 (+)
Gene ID: opera_contig_2_148
Type:
Location: 165476 - 165616 (-)
Type:
Location: 165476 - 165616 (-)
Gene ID: opera_contig_2_149
Type: CAZyme
Location: 166192 - 167988 (+)
Type: CAZyme
Location: 166192 - 167988 (+)
Gene ID: opera_contig_2_150
Type: TC
Location: 167991 - 168455 (+)
Type: TC
Location: 167991 - 168455 (+)
Gene ID: opera_contig_2_151
Type: TC
Location: 168549 - 169436 (+)
Type: TC
Location: 168549 - 169436 (+)
Gene ID: opera_contig_2_152
Type: TC
Location: 169426 - 170265 (+)
Type: TC
Location: 169426 - 170265 (+)
Gene ID: opera_contig_2_153
Type:
Location: 170454 - 171077 (+)
Type:
Location: 170454 - 171077 (+)
Gene ID: opera_contig_2_154
Type: TC
Location: 171159 - 171587 (+)
Type: TC
Location: 171159 - 171587 (+)
Gene ID: opera_contig_2_155
Type: TF
Location: 171675 - 172409 (+)
Type: TF
Location: 171675 - 172409 (+)
Gene ID: opera_contig_2_156
Type: STP
Location: 172521 - 173687 (+)
Type: STP
Location: 172521 - 173687 (+)
Gene ID: opera_contig_2_157
Type: CAZyme
Location: 173803 - 174972 (+)
Type: CAZyme
Location: 173803 - 174972 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| opera_contig_2_145 | vegetarian > vegan | 3.27459 | 0.01287 |
| opera_contig_2_149 | vegetarian > vegan | 2.79583 | 0.01287 |
| opera_contig_2_150 | vegetarian > vegan | 3.48920 | 0.01287 |
| opera_contig_2_152 | vegetarian > vegan | 2.39093 | 0.01287 |