Cluster: SPMP17_bin.41_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP17_bin.41
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_6 | opera_contig_6_110 | 129769 | 132096 | - | 9.A.8.1.6 |
| TC | opera_contig_6 | opera_contig_6_111 | 132220 | 132441 | - | 9.A.8.1.6 |
| STP | opera_contig_6 | opera_contig_6_112 | 132481 | 132723 | - | FeoA |
| STP | opera_contig_6 | opera_contig_6_113 | 132959 | 133207 | - | PTS-HPr |
| TC | opera_contig_6 | opera_contig_6_114 | 133628 | 135091 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | opera_contig_6 | opera_contig_6_115 | 135245 | 135700 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | opera_contig_6 | opera_contig_6_116 | 135704 | 138712 | - | GH2 |
Gene ID: opera_contig_6_110
Type: TC
Location: 129769 - 132096 (-)
Type: TC
Location: 129769 - 132096 (-)
Gene ID: opera_contig_6_111
Type: TC
Location: 132220 - 132441 (-)
Type: TC
Location: 132220 - 132441 (-)
Gene ID: opera_contig_6_112
Type: STP
Location: 132481 - 132723 (-)
Type: STP
Location: 132481 - 132723 (-)
Gene ID: opera_contig_6_113
Type: STP
Location: 132959 - 133207 (-)
Type: STP
Location: 132959 - 133207 (-)
Gene ID: opera_contig_6_114
Type: TC
Location: 133628 - 135091 (-)
Type: TC
Location: 133628 - 135091 (-)
Gene ID: opera_contig_6_115
Type:
Location: 135245 - 135700 (-)
Type:
Location: 135245 - 135700 (-)
Gene ID: opera_contig_6_116
Type: CAZyme
Location: 135704 - 138712 (-)
Type: CAZyme
Location: 135704 - 138712 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.