Cluster: SPMP17_bin.41_CGC15
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP17_bin.41
- CGC Family ID: CGCFAM_00019
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_3 | opera_contig_3_345 | 376424 | 377506 | - | 3.A.1.17.10 |
| NULL(UNKNOWN) | opera_contig_3 | opera_contig_3_346 | 377481 | 377717 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | opera_contig_3 | opera_contig_3_347 | 378344 | 379108 | - | Fe_hyd_lg_C |
| TC | opera_contig_3 | opera_contig_3_348 | 379098 | 379589 | - | 3.D.1.1.1 |
| STP | opera_contig_3 | opera_contig_3_349 | 379583 | 381415 | - | Pyr_redox_2 |
| CAZyme | opera_contig_3 | opera_contig_3_350 | 381672 | 383054 | - | GH4 |
| TC | opera_contig_3 | opera_contig_3_351 | 383058 | 384674 | - | 4.A.1.1.3 |
| pfam | opera_contig_3 | opera_contig_3_352 | 384774 | 385640 | - | PRD | PRD | CAT_RBD |
| TC | opera_contig_3 | opera_contig_3_353 | 385647 | 386159 | - | 4.A.1.2.5 |
| STP | opera_contig_3 | opera_contig_3_354 | 386502 | 387263 | - | Fer4 | Fer4 |
| NULL(UNKNOWN) | opera_contig_3 | opera_contig_3_355 | 387920 | 388891 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_3 | opera_contig_3_356 | 388866 | 390173 | - | 1.I.1.1.3 |
Gene ID: opera_contig_3_345
Type: TC
Location: 376424 - 377506 (-)
Type: TC
Location: 376424 - 377506 (-)
Gene ID: opera_contig_3_346
Type:
Location: 377481 - 377717 (-)
Type:
Location: 377481 - 377717 (-)
Gene ID: opera_contig_3_347
Type: pfam
Location: 378344 - 379108 (-)
Type: pfam
Location: 378344 - 379108 (-)
Gene ID: opera_contig_3_348
Type: TC
Location: 379098 - 379589 (-)
Type: TC
Location: 379098 - 379589 (-)
Gene ID: opera_contig_3_349
Type: STP
Location: 379583 - 381415 (-)
Type: STP
Location: 379583 - 381415 (-)
Gene ID: opera_contig_3_350
Type: CAZyme
Location: 381672 - 383054 (-)
Type: CAZyme
Location: 381672 - 383054 (-)
Gene ID: opera_contig_3_351
Type: TC
Location: 383058 - 384674 (-)
Type: TC
Location: 383058 - 384674 (-)
Gene ID: opera_contig_3_352
Type: pfam
Location: 384774 - 385640 (-)
Type: pfam
Location: 384774 - 385640 (-)
Gene ID: opera_contig_3_353
Type: TC
Location: 385647 - 386159 (-)
Type: TC
Location: 385647 - 386159 (-)
Gene ID: opera_contig_3_354
Type: STP
Location: 386502 - 387263 (-)
Type: STP
Location: 386502 - 387263 (-)
Gene ID: opera_contig_3_355
Type:
Location: 387920 - 388891 (-)
Type:
Location: 387920 - 388891 (-)
Gene ID: opera_contig_3_356
Type: TC
Location: 388866 - 390173 (-)
Type: TC
Location: 388866 - 390173 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.