Cluster: SPMP17_bin.41_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP17_bin.41
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_3 | opera_contig_3_338 | 367750 | 368466 | - | 9.B.143.2.3 |
| pfam | opera_contig_3 | opera_contig_3_339 | 368719 | 370860 | + | Radical_SAM_N | DUF3362 |
| TC | opera_contig_3 | opera_contig_3_340 | 370987 | 372357 | - | 4.A.1.2.11 |
| CAZyme | opera_contig_3 | opera_contig_3_341 | 372369 | 373847 | - | GH1 |
Gene ID: opera_contig_3_338
Type: TC
Location: 367750 - 368466 (-)
Type: TC
Location: 367750 - 368466 (-)
Gene ID: opera_contig_3_339
Type: pfam
Location: 368719 - 370860 (+)
Type: pfam
Location: 368719 - 370860 (+)
Gene ID: opera_contig_3_340
Type: TC
Location: 370987 - 372357 (-)
Type: TC
Location: 370987 - 372357 (-)
Gene ID: opera_contig_3_341
Type: CAZyme
Location: 372369 - 373847 (-)
Type: CAZyme
Location: 372369 - 373847 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| opera_contig_3_340 | vegan > omnivore | 1.34696 | 0.01560 |
| opera_contig_3_341 | vegan > omnivore | 1.36169 | 0.01560 |