Cluster: SPMP16_bin.51_CGC9
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP16_bin.51
- CGC Family ID: CGCFAM_04022
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_210436 | opera_contig_210436_118 | 144031 | 145671 | - | GT9 |
| pfam | opera_contig_210436 | opera_contig_210436_119 | 145691 | 146836 | - | T6SS_VgrG3-like_C |
| TC | opera_contig_210436 | opera_contig_210436_120 | 147065 | 149206 | - | 1.B.52.2.1 |
| pfam | opera_contig_210436 | opera_contig_210436_121 | 149542 | 150186 | - | TraT |
| NULL(UNKNOWN) | opera_contig_210436 | opera_contig_210436_122 | 150357 | 151073 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_210436 | opera_contig_210436_123 | 151315 | 153555 | + | 3.A.7.7.1 |
| pfam | opera_contig_210436 | opera_contig_210436_124 | 153548 | 154720 | + | XdhC_CoxI | XdhC_C |
| NULL(UNKNOWN) | opera_contig_210436 | opera_contig_210436_125 | 154796 | 155422 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_210436 | opera_contig_210436_126 | 156182 | 157300 | + | 2.A.6.2.42 |
| TC | opera_contig_210436 | opera_contig_210436_127 | 157307 | 160510 | + | 2.A.6.2.22 |
| TC | opera_contig_210436 | opera_contig_210436_128 | 160507 | 162054 | + | 2.A.6.2.46 |
Gene ID: opera_contig_210436_118
Type: CAZyme
Location: 144031 - 145671 (-)
Type: CAZyme
Location: 144031 - 145671 (-)
Gene ID: opera_contig_210436_119
Type: pfam
Location: 145691 - 146836 (-)
Type: pfam
Location: 145691 - 146836 (-)
Gene ID: opera_contig_210436_120
Type: TC
Location: 147065 - 149206 (-)
Type: TC
Location: 147065 - 149206 (-)
Gene ID: opera_contig_210436_121
Type: pfam
Location: 149542 - 150186 (-)
Type: pfam
Location: 149542 - 150186 (-)
Gene ID: opera_contig_210436_122
Type:
Location: 150357 - 151073 (-)
Type:
Location: 150357 - 151073 (-)
Gene ID: opera_contig_210436_123
Type: TC
Location: 151315 - 153555 (+)
Type: TC
Location: 151315 - 153555 (+)
Gene ID: opera_contig_210436_124
Type: pfam
Location: 153548 - 154720 (+)
Type: pfam
Location: 153548 - 154720 (+)
Gene ID: opera_contig_210436_125
Type:
Location: 154796 - 155422 (+)
Type:
Location: 154796 - 155422 (+)
Gene ID: opera_contig_210436_126
Type: TC
Location: 156182 - 157300 (+)
Type: TC
Location: 156182 - 157300 (+)
Gene ID: opera_contig_210436_127
Type: TC
Location: 157307 - 160510 (+)
Type: TC
Location: 157307 - 160510 (+)
Gene ID: opera_contig_210436_128
Type: TC
Location: 160507 - 162054 (+)
Type: TC
Location: 160507 - 162054 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Desulfobacterota
Class
Desulfovibrionia
Order
Desulfovibrionales
Family
Desulfovibrionaceae
Genus
Desulfovibrio
Species
Desulfovibrio fairfieldensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.