Cluster: SPMP16_bin.51_CGC19
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP16_bin.51
- CGC Family ID: CGCFAM_09850
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_210439 | opera_contig_210439_40 | 46418 | 47716 | - | 2.A.56.1.4 |
| TC | opera_contig_210439 | opera_contig_210439_41 | 47728 | 48198 | - | 2.A.56.1.4 |
| TC | opera_contig_210439 | opera_contig_210439_42 | 48425 | 49507 | - | 2.A.56.1.2 |
| NULL(UNKNOWN) | opera_contig_210439 | opera_contig_210439_43 | 49584 | 50555 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | opera_contig_210439 | opera_contig_210439_44 | 50810 | 53152 | - | GT51 |
| peptidase | opera_contig_210439 | opera_contig_210439_45 | 53142 | 58988 | - | I39.UPW |
| TC | opera_contig_210439 | opera_contig_210439_46 | 59191 | 60546 | + | 2.A.66.1.33 |
| pfam | opera_contig_210439 | opera_contig_210439_47 | 60565 | 61566 | - | DUF1848 |
| TC | opera_contig_210439 | opera_contig_210439_48 | 61581 | 62444 | - | 3.A.1.15.13 |
| TC | opera_contig_210439 | opera_contig_210439_49 | 62437 | 63381 | - | 3.A.1.15.5 |
| TC | opera_contig_210439 | opera_contig_210439_50 | 63368 | 64360 | - | 3.A.1.15.1 |
| pfam | opera_contig_210439 | opera_contig_210439_51 | 64611 | 65447 | + | Aldo_ket_red |
| TC | opera_contig_210439 | opera_contig_210439_52 | 65872 | 67992 | + | 1.B.52.2.1 |
| TC | opera_contig_210439 | opera_contig_210439_53 | 68205 | 68945 | - | 5.A.3.3.2 |
| TC | opera_contig_210439 | opera_contig_210439_54 | 68948 | 71344 | - | 5.A.3.2.1 |
Gene ID: opera_contig_210439_40
Type: TC
Location: 46418 - 47716 (-)
Type: TC
Location: 46418 - 47716 (-)
Gene ID: opera_contig_210439_41
Type: TC
Location: 47728 - 48198 (-)
Type: TC
Location: 47728 - 48198 (-)
Gene ID: opera_contig_210439_42
Type: TC
Location: 48425 - 49507 (-)
Type: TC
Location: 48425 - 49507 (-)
Gene ID: opera_contig_210439_43
Type:
Location: 49584 - 50555 (-)
Type:
Location: 49584 - 50555 (-)
Gene ID: opera_contig_210439_44
Type: CAZyme
Location: 50810 - 53152 (-)
Type: CAZyme
Location: 50810 - 53152 (-)
Gene ID: opera_contig_210439_45
Type: peptidase
Location: 53142 - 58988 (-)
Type: peptidase
Location: 53142 - 58988 (-)
Gene ID: opera_contig_210439_46
Type: TC
Location: 59191 - 60546 (+)
Type: TC
Location: 59191 - 60546 (+)
Gene ID: opera_contig_210439_47
Type: pfam
Location: 60565 - 61566 (-)
Type: pfam
Location: 60565 - 61566 (-)
Gene ID: opera_contig_210439_48
Type: TC
Location: 61581 - 62444 (-)
Type: TC
Location: 61581 - 62444 (-)
Gene ID: opera_contig_210439_49
Type: TC
Location: 62437 - 63381 (-)
Type: TC
Location: 62437 - 63381 (-)
Gene ID: opera_contig_210439_50
Type: TC
Location: 63368 - 64360 (-)
Type: TC
Location: 63368 - 64360 (-)
Gene ID: opera_contig_210439_51
Type: pfam
Location: 64611 - 65447 (+)
Type: pfam
Location: 64611 - 65447 (+)
Gene ID: opera_contig_210439_52
Type: TC
Location: 65872 - 67992 (+)
Type: TC
Location: 65872 - 67992 (+)
Gene ID: opera_contig_210439_53
Type: TC
Location: 68205 - 68945 (-)
Type: TC
Location: 68205 - 68945 (-)
Gene ID: opera_contig_210439_54
Type: TC
Location: 68948 - 71344 (-)
Type: TC
Location: 68948 - 71344 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Desulfobacterota
Class
Desulfovibrionia
Order
Desulfovibrionales
Family
Desulfovibrionaceae
Genus
Desulfovibrio
Species
Desulfovibrio fairfieldensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.