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Cluster: Rep_998_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_998_c_36 Rep_998_c_36_6 3356 5275 - GH23
TC Rep_998_c_36 Rep_998_c_36_7 5546 7342 + 3.A.9.1.1
sulfatase Rep_998_c_36 Rep_998_c_36_8 7346 10963 + S1_37
TF Rep_998_c_36 Rep_998_c_36_9 10973 11674 + GntR
TC Rep_998_c_36 Rep_998_c_36_10 11704 12972 + 3.A.1.4.5
TC Rep_998_c_36 Rep_998_c_36_11 13076 14641 + 3.A.1.4.4
TC Rep_998_c_36 Rep_998_c_36_12 14641 15717 + 3.A.1.4.4
TC Rep_998_c_36 Rep_998_c_36_13 15710 16252 + 3.A.1.4.4
Gene ID: Rep_998_c_36_6
Type: CAZyme
Location: 3356 - 5275 (-)
Gene ID: Rep_998_c_36_7
Type: TC
Location: 5546 - 7342 (+)
Gene ID: Rep_998_c_36_8
Type: sulfatase
Location: 7346 - 10963 (+)
Gene ID: Rep_998_c_36_9
Type: TF
Location: 10973 - 11674 (+)
Gene ID: Rep_998_c_36_10
Type: TC
Location: 11704 - 12972 (+)
Gene ID: Rep_998_c_36_11
Type: TC
Location: 13076 - 14641 (+)
Gene ID: Rep_998_c_36_12
Type: TC
Location: 14641 - 15717 (+)
Gene ID: Rep_998_c_36_13
Type: TC
Location: 15710 - 16252 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_998_c_36_10 vegetarian > vegan 2.12251 0.04185

🧭 Explore Read Mapping of CGC

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