Cluster: Rep_998_CGC4
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_998
- CGC Family ID: CGCFAM_00625
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_998_c_23 | Rep_998_c_23_1 | 3 | 434 | + | 1.B.42.1.2 |
| TC | Rep_998_c_23 | Rep_998_c_23_2 | 440 | 1165 | + | 1.B.42.1.2 |
| pfam | Rep_998_c_23 | Rep_998_c_23_3 | 1214 | 2647 | + | Sigma54_AID | Sigma54_DBD | Sigma54_CBD |
| pfam | Rep_998_c_23 | Rep_998_c_23_4 | 2669 | 2956 | + | Ribosomal_S30AE |
| TC | Rep_998_c_23 | Rep_998_c_23_5 | 3109 | 3588 | + | 4.A.2.1.7 |
| pfam | Rep_998_c_23 | Rep_998_c_23_6 | 3636 | 4490 | + | RapZ-like_N | PapZ_C |
| STP | Rep_998_c_23 | Rep_998_c_23_7 | 4487 | 4759 | + | PTS-HPr |
| CAZyme | Rep_998_c_23 | Rep_998_c_23_8 | 4763 | 5482 | - | GT51 |
Gene ID: Rep_998_c_23_1
Type: TC
Location: 3 - 434 (+)
Type: TC
Location: 3 - 434 (+)
Gene ID: Rep_998_c_23_2
Type: TC
Location: 440 - 1165 (+)
Type: TC
Location: 440 - 1165 (+)
Gene ID: Rep_998_c_23_3
Type: pfam
Location: 1214 - 2647 (+)
Type: pfam
Location: 1214 - 2647 (+)
Gene ID: Rep_998_c_23_4
Type: pfam
Location: 2669 - 2956 (+)
Type: pfam
Location: 2669 - 2956 (+)
Gene ID: Rep_998_c_23_5
Type: TC
Location: 3109 - 3588 (+)
Type: TC
Location: 3109 - 3588 (+)
Gene ID: Rep_998_c_23_6
Type: pfam
Location: 3636 - 4490 (+)
Type: pfam
Location: 3636 - 4490 (+)
Gene ID: Rep_998_c_23_7
Type: STP
Location: 4487 - 4759 (+)
Type: STP
Location: 4487 - 4759 (+)
Gene ID: Rep_998_c_23_8
Type: CAZyme
Location: 4763 - 5482 (-)
Type: CAZyme
Location: 4763 - 5482 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea conspicua
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.