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Cluster: Rep_998_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_998_c_0 Rep_998_c_0_1 3 644 + 3.A.1.3.3
pfam Rep_998_c_0 Rep_998_c_0_2 658 1332 + DUF1989
peptidase Rep_998_c_0 Rep_998_c_0_3 1371 2474 - M20.UND
TC Rep_998_c_0 Rep_998_c_0_4 2479 2958 - 9.B.156.1.2
TC Rep_998_c_0 Rep_998_c_0_5 2945 3616 - 9.A.5.4.2
pfam Rep_998_c_0 Rep_998_c_0_6 4098 4604 + Ferritin
CAZyme Rep_998_c_0 Rep_998_c_0_7 4662 7025 - GH31_2
TC Rep_998_c_0 Rep_998_c_0_8 7035 8345 - 2.A.1.14.2
TF Rep_998_c_0 Rep_998_c_0_9 8569 9633 + LacI
TC Rep_998_c_0 Rep_998_c_0_10 9630 12479 - 9.B.34.1.2
Gene ID: Rep_998_c_0_1
Type: TC
Location: 3 - 644 (+)
Gene ID: Rep_998_c_0_2
Type: pfam
Location: 658 - 1332 (+)
Gene ID: Rep_998_c_0_3
Type: peptidase
Location: 1371 - 2474 (-)
Gene ID: Rep_998_c_0_4
Type: TC
Location: 2479 - 2958 (-)
Gene ID: Rep_998_c_0_5
Type: TC
Location: 2945 - 3616 (-)
Gene ID: Rep_998_c_0_6
Type: pfam
Location: 4098 - 4604 (+)
Gene ID: Rep_998_c_0_7
Type: CAZyme
Location: 4662 - 7025 (-)
Gene ID: Rep_998_c_0_8
Type: TC
Location: 7035 - 8345 (-)
Gene ID: Rep_998_c_0_9
Type: TF
Location: 8569 - 9633 (+)
Gene ID: Rep_998_c_0_10
Type: TC
Location: 9630 - 12479 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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