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Cluster: Rep_990_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_990_c_1 Rep_990_c_1_96 108724 110748 + GH31_13
TC Rep_990_c_1 Rep_990_c_1_97 110794 112176 + 2.A.2.3.9
TC Rep_990_c_1 Rep_990_c_1_98 112220 113644 + 2.A.2.3.9
TC Rep_990_c_1 Rep_990_c_1_99 113662 114405 + 1.B.35.2.2
sulfatase Rep_990_c_1 Rep_990_c_1_100 114456 116279 - S1_97
pfam Rep_990_c_1 Rep_990_c_1_101 116658 118067 + Gln-synt_C | Gln-synt_N
TC Rep_990_c_1 Rep_990_c_1_102 118238 119287 + 2.A.21.9.1
Gene ID: Rep_990_c_1_96
Type: CAZyme
Location: 108724 - 110748 (+)
Gene ID: Rep_990_c_1_97
Type: TC
Location: 110794 - 112176 (+)
Gene ID: Rep_990_c_1_98
Type: TC
Location: 112220 - 113644 (+)
Gene ID: Rep_990_c_1_99
Type: TC
Location: 113662 - 114405 (+)
Gene ID: Rep_990_c_1_100
Type: sulfatase
Location: 114456 - 116279 (-)
Gene ID: Rep_990_c_1_101
Type: pfam
Location: 116658 - 118067 (+)
Gene ID: Rep_990_c_1_102
Type: TC
Location: 118238 - 119287 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_990_c_1_97 vegetarian > omnivore 1.09227 0.03781
Rep_990_c_1_99 vegetarian > omnivore 1.44438 0.03781
Rep_990_c_1_99 vegetarian > vegan 1.57152 0.04130

🧭 Explore Read Mapping of CGC

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