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Cluster: Rep_990_CGC58

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_990_c_76 Rep_990_c_76_1 2 1111 - 2.A.6.2.12
TC Rep_990_c_76 Rep_990_c_76_2 1111 2313 - 8.A.1.6.2
pfam Rep_990_c_76 Rep_990_c_76_3 2521 3873 - HSP70 | HSP70 | MreB_Mbl
STP Rep_990_c_76 Rep_990_c_76_4 4004 4876 + AlkA_N | HhH-GPD
TC Rep_990_c_76 Rep_990_c_76_5 4841 8170 - 9.B.34.1.1
pfam Rep_990_c_76 Rep_990_c_76_6 8193 9155 + PRK
pfam Rep_990_c_76 Rep_990_c_76_7 9247 9828 + DCD_N | DCD
TC Rep_990_c_76 Rep_990_c_76_8 9851 11701 + 9.B.22.2.1
TC Rep_990_c_76 Rep_990_c_76_9 11813 13396 - 2.A.109.2.3
TC Rep_990_c_76 Rep_990_c_76_10 14089 15228 + 1.B.18.3.1
pfam Rep_990_c_76 Rep_990_c_76_11 15235 15678 + LMWPc
TC Rep_990_c_76 Rep_990_c_76_12 15681 17843 + 8.A.3.3.2
CAZyme Rep_990_c_76 Rep_990_c_76_13 17964 18806 + GT2
Gene ID: Rep_990_c_76_1
Type: TC
Location: 2 - 1111 (-)
Gene ID: Rep_990_c_76_2
Type: TC
Location: 1111 - 2313 (-)
Gene ID: Rep_990_c_76_3
Type: pfam
Location: 2521 - 3873 (-)
Gene ID: Rep_990_c_76_4
Type: STP
Location: 4004 - 4876 (+)
Gene ID: Rep_990_c_76_5
Type: TC
Location: 4841 - 8170 (-)
Gene ID: Rep_990_c_76_6
Type: pfam
Location: 8193 - 9155 (+)
Gene ID: Rep_990_c_76_7
Type: pfam
Location: 9247 - 9828 (+)
Gene ID: Rep_990_c_76_8
Type: TC
Location: 9851 - 11701 (+)
Gene ID: Rep_990_c_76_9
Type: TC
Location: 11813 - 13396 (-)
Gene ID: Rep_990_c_76_10
Type: TC
Location: 14089 - 15228 (+)
Gene ID: Rep_990_c_76_11
Type: pfam
Location: 15235 - 15678 (+)
Gene ID: Rep_990_c_76_12
Type: TC
Location: 15681 - 17843 (+)
Gene ID: Rep_990_c_76_13
Type: CAZyme
Location: 17964 - 18806 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_990_c_76_4 vegetarian > omnivore 1.51165 0.03781
Rep_990_c_76_5 vegan > omnivore 1.23372 0.00701
Rep_990_c_76_5 vegetarian > omnivore 1.40102 0.03781

🧭 Explore Read Mapping of CGC

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