dbCAN HGM

Cluster: Rep_990_CGC56

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_990_c_73	Rep_990_c_73_1	77	1672	-	3.A.1.121.4
peptidase	Rep_990_c_73	Rep_990_c_73_2	1895	2815	+	C82.UPB
TF	Rep_990_c_73	Rep_990_c_73_3	2858	3574	-	GntR
TC	Rep_990_c_73	Rep_990_c_73_4	3590	4912	-	4.A.3.2.9
CAZyme	Rep_990_c_73	Rep_990_c_73_5	4964	6340	-	GH1
TC	Rep_990_c_73	Rep_990_c_73_6	6502	7542	-	8.A.5.1.3
TC	Rep_990_c_73	Rep_990_c_73_7	7650	9173	-	1.B.17.3.8
TC	Rep_990_c_73	Rep_990_c_73_8	9173	10744	-	2.A.1.3.2
TC	Rep_990_c_73	Rep_990_c_73_9	10741	11835	-	8.A.1.1.1
TC	Rep_990_c_73	Rep_990_c_73_10	11937	13046	-	2.A.45.2.5

Gene ID: Rep_990_c_73_1
Type: TC
Location: 77 - 1672 (-)

Gene ID: Rep_990_c_73_2
Type: peptidase
Location: 1895 - 2815 (+)

Gene ID: Rep_990_c_73_3
Type: TF
Location: 2858 - 3574 (-)

Gene ID: Rep_990_c_73_4
Type: TC
Location: 3590 - 4912 (-)

Gene ID: Rep_990_c_73_5
Type: CAZyme
Location: 4964 - 6340 (-)

Gene ID: Rep_990_c_73_6
Type: TC
Location: 6502 - 7542 (-)

Gene ID: Rep_990_c_73_7
Type: TC
Location: 7650 - 9173 (-)

Gene ID: Rep_990_c_73_8
Type: TC
Location: 9173 - 10744 (-)

Gene ID: Rep_990_c_73_9
Type: TC
Location: 10741 - 11835 (-)

Gene ID: Rep_990_c_73_10
Type: TC
Location: 11937 - 13046 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
Rep_990_c_73_4	vegetarian > omnivore	1.05205	0.03781
Rep_990_c_73_4	vegetarian > vegan	1.11882	0.04130
Rep_990_c_73_6	vegetarian > omnivore	1.83831	0.03781
Rep_990_c_73_7	vegetarian > omnivore	1.16105	0.03781

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_990_c_73_2	UC > CD	2.81971	0.01829
Rep_990_c_73_2	nonIBD > CD	1.50805	0.00814