dbCAN Logo

Cluster: Rep_990_CGC55

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_990_c_59 Rep_990_c_59_14 15692 16054 - 4.A.4.1.1
TC Rep_990_c_59 Rep_990_c_59_15 16067 17026 - 4.A.4.1.1
TC Rep_990_c_59 Rep_990_c_59_16 17023 17586 - 4.A.4.1.1
CAZyme Rep_990_c_59 Rep_990_c_59_17 17839 18939 + GH103
TC Rep_990_c_59 Rep_990_c_59_18 19212 19865 + 3.A.1.15.10
TC Rep_990_c_59 Rep_990_c_59_19 19862 20722 + 3.A.1.15.10
TC Rep_990_c_59 Rep_990_c_59_20 20758 21615 + 3.A.1.15.10
Gene ID: Rep_990_c_59_14
Type: TC
Location: 15692 - 16054 (-)
Gene ID: Rep_990_c_59_15
Type: TC
Location: 16067 - 17026 (-)
Gene ID: Rep_990_c_59_16
Type: TC
Location: 17023 - 17586 (-)
Gene ID: Rep_990_c_59_17
Type: CAZyme
Location: 17839 - 18939 (+)
Gene ID: Rep_990_c_59_18
Type: TC
Location: 19212 - 19865 (+)
Gene ID: Rep_990_c_59_19
Type: TC
Location: 19862 - 20722 (+)
Gene ID: Rep_990_c_59_20
Type: TC
Location: 20758 - 21615 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_990_c_59_14 vegetarian > omnivore 1.25658 0.03781
Rep_990_c_59_14 vegetarian > vegan 1.36835 0.04130
Rep_990_c_59_18 vegetarian > omnivore 1.07349 0.03781
Rep_990_c_59_18 vegetarian > vegan 1.43306 0.04130
Rep_990_c_59_19 vegetarian > omnivore 1.09903 0.03781
Rep_990_c_59_20 vegetarian > omnivore 1.21192 0.03781
Rep_990_c_59_20 vegetarian > vegan 1.44444 0.04130

🧭 Explore Read Mapping of CGC

← Back to Cluster List