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Cluster: Rep_990_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_990_c_59 Rep_990_c_59_1 230 1654 - GH1
TC Rep_990_c_59 Rep_990_c_59_2 1673 3124 - 4.A.1.2.3
TF Rep_990_c_59 Rep_990_c_59_3 3339 4352 + LacI
TC Rep_990_c_59 Rep_990_c_59_4 4487 5032 + 5.A.3.11.1
pfam Rep_990_c_59 Rep_990_c_59_5 5039 7255 + Acylphosphatase | Sua5_yciO_yrdC | zf-HYPF | zf-HYPF | HypF_C | HypF_C_2
TC Rep_990_c_59 Rep_990_c_59_6 7257 8279 + 2.A.52.1.1
STP Rep_990_c_59 Rep_990_c_59_7 8351 9484 - Pyr_redox_2
TC Rep_990_c_59 Rep_990_c_59_8 9481 10917 - 3.D.7.2.3
Gene ID: Rep_990_c_59_1
Type: CAZyme
Location: 230 - 1654 (-)
Gene ID: Rep_990_c_59_2
Type: TC
Location: 1673 - 3124 (-)
Gene ID: Rep_990_c_59_3
Type: TF
Location: 3339 - 4352 (+)
Gene ID: Rep_990_c_59_4
Type: TC
Location: 4487 - 5032 (+)
Gene ID: Rep_990_c_59_5
Type: pfam
Location: 5039 - 7255 (+)
Gene ID: Rep_990_c_59_6
Type: TC
Location: 7257 - 8279 (+)
Gene ID: Rep_990_c_59_7
Type: STP
Location: 8351 - 9484 (-)
Gene ID: Rep_990_c_59_8
Type: TC
Location: 9481 - 10917 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_990_c_59_3 vegetarian > omnivore 1.08239 0.03781

🧭 Explore Read Mapping of CGC

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