dbCAN HGM

Cluster: Rep_990_CGC53

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_990_c_56	Rep_990_c_56_7	4251	4994	-	9.B.158.1.2
pfam	Rep_990_c_56	Rep_990_c_56_8	5073	5633	-	YecM
pfam	Rep_990_c_56	Rep_990_c_56_9	5873	7606	+	tRNA-synt_1d \| Arg_tRNA_synt_N \| DALR_1
CAZyme	Rep_990_c_56	Rep_990_c_56_10	7683	8822	-	GH105
TC	Rep_990_c_56	Rep_990_c_56_11	8827	10410	-	2.A.2.5.2
pfam	Rep_990_c_56	Rep_990_c_56_12	10673	11065	-	FlhE
TC	Rep_990_c_56	Rep_990_c_56_13	11065	13143	-	3.A.6.2.1
TC	Rep_990_c_56	Rep_990_c_56_14	13136	14284	-	3.A.6.2.1

Gene ID: Rep_990_c_56_7
Type: TC
Location: 4251 - 4994 (-)

Gene ID: Rep_990_c_56_8
Type: pfam
Location: 5073 - 5633 (-)

Gene ID: Rep_990_c_56_9
Type: pfam
Location: 5873 - 7606 (+)

Gene ID: Rep_990_c_56_10
Type: CAZyme
Location: 7683 - 8822 (-)

Gene ID: Rep_990_c_56_11
Type: TC
Location: 8827 - 10410 (-)

Gene ID: Rep_990_c_56_12
Type: pfam
Location: 10673 - 11065 (-)

Gene ID: Rep_990_c_56_13
Type: TC
Location: 11065 - 13143 (-)

Gene ID: Rep_990_c_56_14
Type: TC
Location: 13136 - 14284 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
Rep_990_c_56_7	vegetarian > omnivore	1.30308	0.03781
Rep_990_c_56_7	vegetarian > vegan	2.05218	0.04130
Rep_990_c_56_11	vegetarian > omnivore	1.84167	0.02213
Rep_990_c_56_11	vegetarian > vegan	1.20160	0.04130