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Cluster: Rep_990_CGC52

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_990_c_54 Rep_990_c_54_13 13434 14777 - 2.A.13.1.2
pfam Rep_990_c_54 Rep_990_c_54_14 14932 15435 - Ferritin
TC Rep_990_c_54 Rep_990_c_54_15 16212 17201 + 3.A.1.2.2
TC Rep_990_c_54 Rep_990_c_54_16 17273 18787 + 3.A.1.2.2
TC Rep_990_c_54 Rep_990_c_54_17 18802 19788 + 3.A.1.2.2
pfam Rep_990_c_54 Rep_990_c_54_18 19965 20768 + Trehalose_PPase
CAZyme Rep_990_c_54 Rep_990_c_54_19 20743 22167 + GT20
Gene ID: Rep_990_c_54_13
Type: TC
Location: 13434 - 14777 (-)
Gene ID: Rep_990_c_54_14
Type: pfam
Location: 14932 - 15435 (-)
Gene ID: Rep_990_c_54_15
Type: TC
Location: 16212 - 17201 (+)
Gene ID: Rep_990_c_54_16
Type: TC
Location: 17273 - 18787 (+)
Gene ID: Rep_990_c_54_17
Type: TC
Location: 18802 - 19788 (+)
Gene ID: Rep_990_c_54_18
Type: pfam
Location: 19965 - 20768 (+)
Gene ID: Rep_990_c_54_19
Type: CAZyme
Location: 20743 - 22167 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_990_c_54_13 vegetarian > omnivore 1.53449 0.03781
Rep_990_c_54_18 vegetarian > omnivore 1.60942 0.03781
Rep_990_c_54_18 vegetarian > vegan 1.35982 0.04130

🧭 Explore Read Mapping of CGC

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