Cluster: Rep_990_CGC51
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_990
- CGC Family ID: CGCFAM_08639
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_990_c_54 | Rep_990_c_54_2 | 2079 | 3185 | - | GT4 |
| TC | Rep_990_c_54 | Rep_990_c_54_3 | 4168 | 4884 | - | 3.A.1.4.1 |
| TC | Rep_990_c_54 | Rep_990_c_54_4 | 4881 | 5756 | - | 3.A.1.4.1 |
| TC | Rep_990_c_54 | Rep_990_c_54_5 | 5753 | 7030 | - | 3.A.1.4.8 |
| TC | Rep_990_c_54 | Rep_990_c_54_6 | 7039 | 7953 | - | 3.A.1.4.8 |
| TC | Rep_990_c_54 | Rep_990_c_54_7 | 8053 | 9174 | - | 3.A.1.4.3 |
| pfam | Rep_990_c_54 | Rep_990_c_54_8 | 9588 | 10256 | + | SEC-C | UPF0149 |
| TC | Rep_990_c_54 | Rep_990_c_54_9 | 10289 | 11431 | - | 2.A.42.1.1 |
Gene ID: Rep_990_c_54_2
Type: CAZyme
Location: 2079 - 3185 (-)
Type: CAZyme
Location: 2079 - 3185 (-)
Gene ID: Rep_990_c_54_3
Type: TC
Location: 4168 - 4884 (-)
Type: TC
Location: 4168 - 4884 (-)
Gene ID: Rep_990_c_54_4
Type: TC
Location: 4881 - 5756 (-)
Type: TC
Location: 4881 - 5756 (-)
Gene ID: Rep_990_c_54_5
Type: TC
Location: 5753 - 7030 (-)
Type: TC
Location: 5753 - 7030 (-)
Gene ID: Rep_990_c_54_6
Type: TC
Location: 7039 - 7953 (-)
Type: TC
Location: 7039 - 7953 (-)
Gene ID: Rep_990_c_54_7
Type: TC
Location: 8053 - 9174 (-)
Type: TC
Location: 8053 - 9174 (-)
Gene ID: Rep_990_c_54_8
Type: pfam
Location: 9588 - 10256 (+)
Type: pfam
Location: 9588 - 10256 (+)
Gene ID: Rep_990_c_54_9
Type: TC
Location: 10289 - 11431 (-)
Type: TC
Location: 10289 - 11431 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter chengduensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_990_c_54_3 | vegetarian > omnivore | 2.63713 | 0.03471 |
| Rep_990_c_54_3 | vegetarian > vegan | 3.09961 | 0.01863 |
| Rep_990_c_54_5 | vegetarian > omnivore | 3.03177 | 0.02213 |
| Rep_990_c_54_6 | vegetarian > omnivore | 2.32792 | 0.01917 |
| Rep_990_c_54_6 | vegetarian > vegan | 1.61538 | 0.04130 |
| Rep_990_c_54_7 | vegetarian > omnivore | 1.27218 | 0.03781 |
| Rep_990_c_54_8 | vegetarian > omnivore | 1.32298 | 0.03781 |
| Rep_990_c_54_9 | vegetarian > omnivore | 3.03151 | 0.03781 |
| Rep_990_c_54_9 | vegetarian > vegan | 1.00680 | 0.04130 |