dbCAN HGM

Cluster: Rep_990_CGC50

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_990_c_51	Rep_990_c_51_1	1	825	-	9.B.33.1.1
TF	Rep_990_c_51	Rep_990_c_51_2	1044	1784	+	MerR
NULL(UNKNOWN)	Rep_990_c_51	Rep_990_c_51_3	1854	1967	+	NULL(UNKNOWN) [View Structural Homologs]
TC	Rep_990_c_51	Rep_990_c_51_4	1942	2679	-	3.A.1.12.15
TC	Rep_990_c_51	Rep_990_c_51_5	2663	3613	-	3.A.1.12.15
TC	Rep_990_c_51	Rep_990_c_51_6	3606	4763	-	3.A.1.12.15
TC	Rep_990_c_51	Rep_990_c_51_7	4776	5693	-	3.A.1.12.15
CAZyme	Rep_990_c_51	Rep_990_c_51_8	5840	8137	-	GH3

Gene ID: Rep_990_c_51_1
Type: TC
Location: 1 - 825 (-)

Gene ID: Rep_990_c_51_2
Type: TF
Location: 1044 - 1784 (+)

Gene ID: Rep_990_c_51_3
Type:
Location: 1854 - 1967 (+)

Gene ID: Rep_990_c_51_4
Type: TC
Location: 1942 - 2679 (-)

Gene ID: Rep_990_c_51_5
Type: TC
Location: 2663 - 3613 (-)

Gene ID: Rep_990_c_51_6
Type: TC
Location: 3606 - 4763 (-)

Gene ID: Rep_990_c_51_7
Type: TC
Location: 4776 - 5693 (-)

Gene ID: Rep_990_c_51_8
Type: CAZyme
Location: 5840 - 8137 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
Rep_990_c_51_1	vegetarian > omnivore	1.38174	0.03781
Rep_990_c_51_2	vegetarian > omnivore	2.07702	0.03781
Rep_990_c_51_2	vegetarian > vegan	1.34542	0.04130
Rep_990_c_51_3	vegetarian > omnivore	2.77770	0.03781
Rep_990_c_51_3	vegetarian > vegan	1.52140	0.04130

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_990_c_51_7	omnivore > flexitarian	1.47297	0.01186