Cluster: Rep_990_CGC5
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate: galactan
- Genome ID: Rep_990
- CGC Family ID: CGCFAM_00933
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_990_c_1 | Rep_990_c_1_63 | 69247 | 70524 | - | 2.A.1.5.4 |
| CAZyme | Rep_990_c_1 | Rep_990_c_1_64 | 70569 | 72692 | - | GH36 |
| TF | Rep_990_c_1 | Rep_990_c_1_65 | 72796 | 73791 | - | LacI |
| TF | Rep_990_c_1 | Rep_990_c_1_66 | 73809 | 74357 | - | HTH_3 |
| TC | Rep_990_c_1 | Rep_990_c_1_67 | 74461 | 75120 | + | 2.A.78.2.3 |
| pfam | Rep_990_c_1 | Rep_990_c_1_68 | 75120 | 75443 | + | AzlD |
| NULL(UNKNOWN) | Rep_990_c_1 | Rep_990_c_1_69 | 75486 | 76085 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_990_c_1 | Rep_990_c_1_70 | 76076 | 78502 | - | 1.B.11.5.1 |
Gene ID: Rep_990_c_1_63
Type: TC
Location: 69247 - 70524 (-)
Type: TC
Location: 69247 - 70524 (-)
Gene ID: Rep_990_c_1_64
Type: CAZyme
Location: 70569 - 72692 (-)
Type: CAZyme
Location: 70569 - 72692 (-)
Gene ID: Rep_990_c_1_65
Type: TF
Location: 72796 - 73791 (-)
Type: TF
Location: 72796 - 73791 (-)
Gene ID: Rep_990_c_1_66
Type: TF
Location: 73809 - 74357 (-)
Type: TF
Location: 73809 - 74357 (-)
Gene ID: Rep_990_c_1_67
Type: TC
Location: 74461 - 75120 (+)
Type: TC
Location: 74461 - 75120 (+)
Gene ID: Rep_990_c_1_68
Type: pfam
Location: 75120 - 75443 (+)
Type: pfam
Location: 75120 - 75443 (+)
Gene ID: Rep_990_c_1_69
Type:
Location: 75486 - 76085 (-)
Type:
Location: 75486 - 76085 (-)
Gene ID: Rep_990_c_1_70
Type: TC
Location: 76076 - 78502 (-)
Type: TC
Location: 76076 - 78502 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter chengduensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_990_c_1_63 | vegetarian > omnivore | 1.49722 | 0.03781 |
| Rep_990_c_1_63 | vegetarian > vegan | 1.06500 | 0.04130 |
| Rep_990_c_1_65 | vegetarian > omnivore | 1.10408 | 0.03781 |
| Rep_990_c_1_65 | vegetarian > vegan | 1.34727 | 0.04130 |
| Rep_990_c_1_66 | vegetarian > omnivore | 1.22999 | 0.03781 |