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Cluster: Rep_990_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_990_c_50 Rep_990_c_50_14 12927 13235 - 8.A.2.1.3
CAZyme Rep_990_c_50 Rep_990_c_50_15 13381 14988 + AA1
pfam Rep_990_c_50 Rep_990_c_50_16 15121 17511 - PQQ | PQQ | PQQ | PQQ | PQQ | PQQ | PQQ_2
STP Rep_990_c_50 Rep_990_c_50_17 17720 18256 + Pribosyltran
TC Rep_990_c_50 Rep_990_c_50_18 18366 19028 - 2.A.53.3.8
TC Rep_990_c_50 Rep_990_c_50_19 19136 19642 + 3.A.1.105.17
TC Rep_990_c_50 Rep_990_c_50_20 19663 20067 + 3.A.1.105.17
TC Rep_990_c_50 Rep_990_c_50_21 20064 20834 + 3.A.1.105.17
pfam Rep_990_c_50 Rep_990_c_50_22 20939 21379 + EIIA-man
CAZyme Rep_990_c_50 Rep_990_c_50_23 21537 22691 + CE4
Gene ID: Rep_990_c_50_14
Type: TC
Location: 12927 - 13235 (-)
Gene ID: Rep_990_c_50_15
Type: CAZyme
Location: 13381 - 14988 (+)
Gene ID: Rep_990_c_50_16
Type: pfam
Location: 15121 - 17511 (-)
Gene ID: Rep_990_c_50_17
Type: STP
Location: 17720 - 18256 (+)
Gene ID: Rep_990_c_50_18
Type: TC
Location: 18366 - 19028 (-)
Gene ID: Rep_990_c_50_19
Type: TC
Location: 19136 - 19642 (+)
Gene ID: Rep_990_c_50_20
Type: TC
Location: 19663 - 20067 (+)
Gene ID: Rep_990_c_50_21
Type: TC
Location: 20064 - 20834 (+)
Gene ID: Rep_990_c_50_22
Type: pfam
Location: 20939 - 21379 (+)
Gene ID: Rep_990_c_50_23
Type: CAZyme
Location: 21537 - 22691 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_990_c_50_21 vegetarian > omnivore 1.01002 0.03781
Rep_990_c_50_22 vegetarian > omnivore 2.13334 0.03781

🧭 Explore Read Mapping of CGC

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