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Cluster: Rep_990_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_990_c_49 Rep_990_c_49_19 20041 21633 + 4.A.1.1.3
STP Rep_990_c_49 Rep_990_c_49_20 21682 22854 + Aminotran_1_2
pfam Rep_990_c_49 Rep_990_c_49_21 22951 23952 + A_deaminase
CAZyme Rep_990_c_49 Rep_990_c_49_22 24007 25047 - GH109
TF Rep_990_c_49 Rep_990_c_49_23 25648 25863 + HHA
pfam Rep_990_c_49 Rep_990_c_49_24 25950 26390 + DUF2569
TC Rep_990_c_49 Rep_990_c_49_25 26467 27048 + 3.D.6.1.4
TC Rep_990_c_49 Rep_990_c_49_26 27048 27626 + 3.D.6.1.4
TC Rep_990_c_49 Rep_990_c_49_27 27619 29640 + 3.D.6.1.4
TC Rep_990_c_49 Rep_990_c_49_28 29641 30693 + 3.D.6.1.4
TC Rep_990_c_49 Rep_990_c_49_29 30704 31306 + 3.D.6.1.4
Gene ID: Rep_990_c_49_19
Type: TC
Location: 20041 - 21633 (+)
Gene ID: Rep_990_c_49_20
Type: STP
Location: 21682 - 22854 (+)
Gene ID: Rep_990_c_49_21
Type: pfam
Location: 22951 - 23952 (+)
Gene ID: Rep_990_c_49_22
Type: CAZyme
Location: 24007 - 25047 (-)
Gene ID: Rep_990_c_49_23
Type: TF
Location: 25648 - 25863 (+)
Gene ID: Rep_990_c_49_24
Type: pfam
Location: 25950 - 26390 (+)
Gene ID: Rep_990_c_49_25
Type: TC
Location: 26467 - 27048 (+)
Gene ID: Rep_990_c_49_26
Type: TC
Location: 27048 - 27626 (+)
Gene ID: Rep_990_c_49_27
Type: TC
Location: 27619 - 29640 (+)
Gene ID: Rep_990_c_49_28
Type: TC
Location: 29641 - 30693 (+)
Gene ID: Rep_990_c_49_29
Type: TC
Location: 30704 - 31306 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_990_c_49_23 vegetarian > vegan 1.44084 0.04130
Rep_990_c_49_25 vegetarian > omnivore 1.10805 0.03781

🧭 Explore Read Mapping of CGC

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