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Cluster: Rep_990_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_990_c_45 Rep_990_c_45_2 2503 3690 - 2.A.41.1.1
TC Rep_990_c_45 Rep_990_c_45_3 4039 5277 + 2.A.55.3.1
pfam Rep_990_c_45 Rep_990_c_45_4 5310 5666 - DUF2502
TC Rep_990_c_45 Rep_990_c_45_5 5794 6792 - 8.A.5.1.3
pfam Rep_990_c_45 Rep_990_c_45_6 6978 8636 + TPP_enzyme_M | TPP_enzyme_C | TPP_enzyme_N
TC Rep_990_c_45 Rep_990_c_45_7 8637 9872 - 2.A.49.7.1
STP Rep_990_c_45 Rep_990_c_45_8 10078 11043 + Glucokinase
TF Rep_990_c_45 Rep_990_c_45_9 11079 11810 - LytTR
TC Rep_990_c_45 Rep_990_c_45_10 11814 13520 - 9.B.33.1.1
STP Rep_990_c_45 Rep_990_c_45_11 13907 15145 + Aminotran_1_2
pfam Rep_990_c_45 Rep_990_c_45_12 15624 16541 - Lip_A_acyltrans
TC Rep_990_c_45 Rep_990_c_45_13 17335 17832 + 3.A.23.2.1
TC Rep_990_c_45 Rep_990_c_45_14 17871 19409 + 3.A.23.2.1
pfam Rep_990_c_45 Rep_990_c_45_15 19428 20777 + T6SS_VasE
pfam Rep_990_c_45 Rep_990_c_45_16 20774 21502 + DotU
TC Rep_990_c_45 Rep_990_c_45_17 21502 23184 + 9.B.186.1.1
pfam Rep_990_c_45 Rep_990_c_45_18 23189 23680 + T6SS_HCP
TC Rep_990_c_45 Rep_990_c_45_19 23839 26508 + 3.A.23.2.1
pfam Rep_990_c_45 Rep_990_c_45_20 26501 28855 + Phage_base_V | Phage_GPD | DUF2345 | T6SS_Vgr
CAZyme Rep_990_c_45 Rep_990_c_45_21 28871 31516 + GH19_1
Gene ID: Rep_990_c_45_2
Type: TC
Location: 2503 - 3690 (-)
Gene ID: Rep_990_c_45_3
Type: TC
Location: 4039 - 5277 (+)
Gene ID: Rep_990_c_45_4
Type: pfam
Location: 5310 - 5666 (-)
Gene ID: Rep_990_c_45_5
Type: TC
Location: 5794 - 6792 (-)
Gene ID: Rep_990_c_45_6
Type: pfam
Location: 6978 - 8636 (+)
Gene ID: Rep_990_c_45_7
Type: TC
Location: 8637 - 9872 (-)
Gene ID: Rep_990_c_45_8
Type: STP
Location: 10078 - 11043 (+)
Gene ID: Rep_990_c_45_9
Type: TF
Location: 11079 - 11810 (-)
Gene ID: Rep_990_c_45_10
Type: TC
Location: 11814 - 13520 (-)
Gene ID: Rep_990_c_45_11
Type: STP
Location: 13907 - 15145 (+)
Gene ID: Rep_990_c_45_12
Type: pfam
Location: 15624 - 16541 (-)
Gene ID: Rep_990_c_45_13
Type: TC
Location: 17335 - 17832 (+)
Gene ID: Rep_990_c_45_14
Type: TC
Location: 17871 - 19409 (+)
Gene ID: Rep_990_c_45_15
Type: pfam
Location: 19428 - 20777 (+)
Gene ID: Rep_990_c_45_16
Type: pfam
Location: 20774 - 21502 (+)
Gene ID: Rep_990_c_45_17
Type: TC
Location: 21502 - 23184 (+)
Gene ID: Rep_990_c_45_18
Type: pfam
Location: 23189 - 23680 (+)
Gene ID: Rep_990_c_45_19
Type: TC
Location: 23839 - 26508 (+)
Gene ID: Rep_990_c_45_20
Type: pfam
Location: 26501 - 28855 (+)
Gene ID: Rep_990_c_45_21
Type: CAZyme
Location: 28871 - 31516 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_990_c_45_5 vegetarian > omnivore 1.36396 0.03781
Rep_990_c_45_7 vegetarian > omnivore 1.86881 0.03781
Rep_990_c_45_7 vegetarian > vegan 1.61057 0.04130
Rep_990_c_45_18 vegetarian > vegan 1.88713 0.04130

🧭 Explore Read Mapping of CGC

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