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Cluster: Rep_990_CGC43

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_990_c_36 Rep_990_c_36_4 4310 5389 + 1.B.42.1.2
TC Rep_990_c_36 Rep_990_c_36_5 5389 6471 + 1.B.42.1.2
STP Rep_990_c_36 Rep_990_c_36_6 6607 8940 + HATPase_c | HisKA | PAS | Response_reg
peptidase Rep_990_c_36 Rep_990_c_36_7 9170 9826 + C56.975
CAZyme Rep_990_c_36 Rep_990_c_36_8 9853 10548 + GT51
TC Rep_990_c_36 Rep_990_c_36_9 10588 10860 - 8.A.8.1.5
pfam Rep_990_c_36 Rep_990_c_36_10 10857 11711 - RapZ-like_N | PapZ_C
TC Rep_990_c_36 Rep_990_c_36_11 11757 12248 - 4.A.2.1.4
pfam Rep_990_c_36 Rep_990_c_36_12 12331 12618 - Ribosomal_S30AE
pfam Rep_990_c_36 Rep_990_c_36_13 12641 14074 - Sigma54_AID | Sigma54_DBD | Sigma54_CBD
TC Rep_990_c_36 Rep_990_c_36_14 14122 14847 - 1.B.42.1.2
TC Rep_990_c_36 Rep_990_c_36_15 14854 15408 - 1.B.42.1.2
TC Rep_990_c_36 Rep_990_c_36_16 15377 15952 - 1.B.42.1.2
pfam Rep_990_c_36 Rep_990_c_36_17 15949 16515 - Hydrolase_3
STP Rep_990_c_36 Rep_990_c_36_18 16530 17516 - CBS | CBS | SIS
TC Rep_990_c_36 Rep_990_c_36_19 17530 18507 - 2.A.19.5.1
TC Rep_990_c_36 Rep_990_c_36_20 18735 19547 + 3.A.1.27.3
TC Rep_990_c_36 Rep_990_c_36_21 19555 20337 + 3.A.1.27.3
TC Rep_990_c_36 Rep_990_c_36_22 20342 20890 + 3.A.1.27.3
TC Rep_990_c_36 Rep_990_c_36_23 20909 21544 + 3.A.1.27.3
TC Rep_990_c_36 Rep_990_c_36_24 21544 21837 + 3.A.1.27.3
Gene ID: Rep_990_c_36_4
Type: TC
Location: 4310 - 5389 (+)
Gene ID: Rep_990_c_36_5
Type: TC
Location: 5389 - 6471 (+)
Gene ID: Rep_990_c_36_6
Type: STP
Location: 6607 - 8940 (+)
Gene ID: Rep_990_c_36_7
Type: peptidase
Location: 9170 - 9826 (+)
Gene ID: Rep_990_c_36_8
Type: CAZyme
Location: 9853 - 10548 (+)
Gene ID: Rep_990_c_36_9
Type: TC
Location: 10588 - 10860 (-)
Gene ID: Rep_990_c_36_10
Type: pfam
Location: 10857 - 11711 (-)
Gene ID: Rep_990_c_36_11
Type: TC
Location: 11757 - 12248 (-)
Gene ID: Rep_990_c_36_12
Type: pfam
Location: 12331 - 12618 (-)
Gene ID: Rep_990_c_36_13
Type: pfam
Location: 12641 - 14074 (-)
Gene ID: Rep_990_c_36_14
Type: TC
Location: 14122 - 14847 (-)
Gene ID: Rep_990_c_36_15
Type: TC
Location: 14854 - 15408 (-)
Gene ID: Rep_990_c_36_16
Type: TC
Location: 15377 - 15952 (-)
Gene ID: Rep_990_c_36_17
Type: pfam
Location: 15949 - 16515 (-)
Gene ID: Rep_990_c_36_18
Type: STP
Location: 16530 - 17516 (-)
Gene ID: Rep_990_c_36_19
Type: TC
Location: 17530 - 18507 (-)
Gene ID: Rep_990_c_36_20
Type: TC
Location: 18735 - 19547 (+)
Gene ID: Rep_990_c_36_21
Type: TC
Location: 19555 - 20337 (+)
Gene ID: Rep_990_c_36_22
Type: TC
Location: 20342 - 20890 (+)
Gene ID: Rep_990_c_36_23
Type: TC
Location: 20909 - 21544 (+)
Gene ID: Rep_990_c_36_24
Type: TC
Location: 21544 - 21837 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_990_c_36_11 vegetarian > vegan 1.05585 0.04130
Rep_990_c_36_20 vegetarian > omnivore 1.08920 0.03781
Rep_990_c_36_20 vegetarian > vegan 1.26955 0.04130
Rep_990_c_36_23 vegetarian > vegan 1.23090 0.04130

🧭 Explore Read Mapping of CGC

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