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Cluster: Rep_990_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_990_c_1 Rep_990_c_1_14 16698 17054 - 4.A.2.1.10
pfam Rep_990_c_1 Rep_990_c_1_15 17057 17932 - Radical_SAM | Fer4_12
pfam Rep_990_c_1 Rep_990_c_1_16 17898 20195 - Gly_radical | PFL-like
TC Rep_990_c_1 Rep_990_c_1_17 20247 20567 - 4.A.2.1.10
TC Rep_990_c_1 Rep_990_c_1_18 20582 21661 - 4.A.2.1.10
TC Rep_990_c_1 Rep_990_c_1_19 21967 24468 + 4.A.2.1.10
pfam Rep_990_c_1 Rep_990_c_1_20 24483 25145 + TAL_FSA
pfam Rep_990_c_1 Rep_990_c_1_21 25158 26261 + Fe-ADH | Fe-ADH_2
CAZyme Rep_990_c_1 Rep_990_c_1_22 26345 28525 - AA2 | AA2
Gene ID: Rep_990_c_1_14
Type: TC
Location: 16698 - 17054 (-)
Gene ID: Rep_990_c_1_15
Type: pfam
Location: 17057 - 17932 (-)
Gene ID: Rep_990_c_1_16
Type: pfam
Location: 17898 - 20195 (-)
Gene ID: Rep_990_c_1_17
Type: TC
Location: 20247 - 20567 (-)
Gene ID: Rep_990_c_1_18
Type: TC
Location: 20582 - 21661 (-)
Gene ID: Rep_990_c_1_19
Type: TC
Location: 21967 - 24468 (+)
Gene ID: Rep_990_c_1_20
Type: pfam
Location: 24483 - 25145 (+)
Gene ID: Rep_990_c_1_21
Type: pfam
Location: 25158 - 26261 (+)
Gene ID: Rep_990_c_1_22
Type: CAZyme
Location: 26345 - 28525 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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