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Cluster: Rep_990_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_990_c_32 Rep_990_c_32_2 613 1278 + 3.A.1.3.6
TC Rep_990_c_32 Rep_990_c_32_3 1257 1934 + 3.A.1.3.10
TC Rep_990_c_32 Rep_990_c_32_4 1915 2652 + 3.A.1.3.21
pfam Rep_990_c_32 Rep_990_c_32_5 2666 3907 + Aminotran_5
peptidase Rep_990_c_32 Rep_990_c_32_6 3904 5142 + M20.UPW
TC Rep_990_c_32 Rep_990_c_32_7 5139 6254 - 3.A.1.1.4
TC Rep_990_c_32 Rep_990_c_32_8 6576 7790 + 3.A.1.1.2
TC Rep_990_c_32 Rep_990_c_32_9 7847 9151 + 3.A.1.1.2
TC Rep_990_c_32 Rep_990_c_32_10 9163 10014 + 3.A.1.1.2
CAZyme Rep_990_c_32 Rep_990_c_32_11 10017 11219 + GH53
CAZyme Rep_990_c_32 Rep_990_c_32_12 11247 13304 + GH42
TC Rep_990_c_32 Rep_990_c_32_13 13449 13691 + 4.A.1.1.1
TC Rep_990_c_32 Rep_990_c_32_14 13796 15061 - 1.B.3.1.1
TF Rep_990_c_32 Rep_990_c_32_15 15331 16407 + LacI
TC Rep_990_c_32 Rep_990_c_32_16 16449 17450 - 1.A.26.1.4
Gene ID: Rep_990_c_32_2
Type: TC
Location: 613 - 1278 (+)
Gene ID: Rep_990_c_32_3
Type: TC
Location: 1257 - 1934 (+)
Gene ID: Rep_990_c_32_4
Type: TC
Location: 1915 - 2652 (+)
Gene ID: Rep_990_c_32_5
Type: pfam
Location: 2666 - 3907 (+)
Gene ID: Rep_990_c_32_6
Type: peptidase
Location: 3904 - 5142 (+)
Gene ID: Rep_990_c_32_7
Type: TC
Location: 5139 - 6254 (-)
Gene ID: Rep_990_c_32_8
Type: TC
Location: 6576 - 7790 (+)
Gene ID: Rep_990_c_32_9
Type: TC
Location: 7847 - 9151 (+)
Gene ID: Rep_990_c_32_10
Type: TC
Location: 9163 - 10014 (+)
Gene ID: Rep_990_c_32_11
Type: CAZyme
Location: 10017 - 11219 (+)
Gene ID: Rep_990_c_32_12
Type: CAZyme
Location: 11247 - 13304 (+)
Gene ID: Rep_990_c_32_13
Type: TC
Location: 13449 - 13691 (+)
Gene ID: Rep_990_c_32_14
Type: TC
Location: 13796 - 15061 (-)
Gene ID: Rep_990_c_32_15
Type: TF
Location: 15331 - 16407 (+)
Gene ID: Rep_990_c_32_16
Type: TC
Location: 16449 - 17450 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_990_c_32_5 vegetarian > omnivore 1.90925 0.03781
Rep_990_c_32_5 vegetarian > vegan 3.05853 0.04130
Rep_990_c_32_16 vegetarian > omnivore 1.11177 0.03781

🧭 Explore Read Mapping of CGC

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