Cluster: Rep_990_CGC36
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 6
- Substrate:
- Genome ID: Rep_990
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_990_c_28 | Rep_990_c_28_23 | 24198 | 25514 | + | 2.A.8.1.4 |
| CAZyme | Rep_990_c_28 | Rep_990_c_28_24 | 25608 | 27689 | - | GH77 |
| CAZyme | Rep_990_c_28 | Rep_990_c_28_25 | 27699 | 30092 | - | GT35 |
| TF | Rep_990_c_28 | Rep_990_c_28_26 | 30678 | 33383 | + | GerE |
| TF | Rep_990_c_28 | Rep_990_c_28_27 | 33465 | 34223 | - | HTH_DeoR |
| TC | Rep_990_c_28 | Rep_990_c_28_28 | 34240 | 35070 | - | 9.B.104.1.1 |
| STP | Rep_990_c_28 | Rep_990_c_28_29 | 35118 | 35450 | - | Rhodanese |
| pfam | Rep_990_c_28 | Rep_990_c_28_30 | 35753 | 37261 | + | DAO | DAO_C |
| CAZyme | Rep_990_c_28 | Rep_990_c_28_31 | 37348 | 39795 | - | GT35 |
| CAZyme | Rep_990_c_28 | Rep_990_c_28_32 | 39814 | 41247 | - | GT5 |
| pfam | Rep_990_c_28 | Rep_990_c_28_33 | 41247 | 42542 | - | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | Rep_990_c_28 | Rep_990_c_28_34 | 42560 | 44533 | - | GH13_11 |
| CAZyme | Rep_990_c_28 | Rep_990_c_28_35 | 44530 | 46716 | - | CBM48 | GH13_9 |
| pfam | Rep_990_c_28 | Rep_990_c_28_36 | 46966 | 48069 | - | Semialdhyde_dh | Semialdhyde_dhC |
| TC | Rep_990_c_28 | Rep_990_c_28_37 | 48247 | 48840 | + | 2.A.95.1.5 |
Gene ID: Rep_990_c_28_23
Type: TC
Location: 24198 - 25514 (+)
Type: TC
Location: 24198 - 25514 (+)
Gene ID: Rep_990_c_28_24
Type: CAZyme
Location: 25608 - 27689 (-)
Type: CAZyme
Location: 25608 - 27689 (-)
Gene ID: Rep_990_c_28_25
Type: CAZyme
Location: 27699 - 30092 (-)
Type: CAZyme
Location: 27699 - 30092 (-)
Gene ID: Rep_990_c_28_26
Type: TF
Location: 30678 - 33383 (+)
Type: TF
Location: 30678 - 33383 (+)
Gene ID: Rep_990_c_28_27
Type: TF
Location: 33465 - 34223 (-)
Type: TF
Location: 33465 - 34223 (-)
Gene ID: Rep_990_c_28_28
Type: TC
Location: 34240 - 35070 (-)
Type: TC
Location: 34240 - 35070 (-)
Gene ID: Rep_990_c_28_29
Type: STP
Location: 35118 - 35450 (-)
Type: STP
Location: 35118 - 35450 (-)
Gene ID: Rep_990_c_28_30
Type: pfam
Location: 35753 - 37261 (+)
Type: pfam
Location: 35753 - 37261 (+)
Gene ID: Rep_990_c_28_31
Type: CAZyme
Location: 37348 - 39795 (-)
Type: CAZyme
Location: 37348 - 39795 (-)
Gene ID: Rep_990_c_28_32
Type: CAZyme
Location: 39814 - 41247 (-)
Type: CAZyme
Location: 39814 - 41247 (-)
Gene ID: Rep_990_c_28_33
Type: pfam
Location: 41247 - 42542 (-)
Type: pfam
Location: 41247 - 42542 (-)
Gene ID: Rep_990_c_28_34
Type: CAZyme
Location: 42560 - 44533 (-)
Type: CAZyme
Location: 42560 - 44533 (-)
Gene ID: Rep_990_c_28_35
Type: CAZyme
Location: 44530 - 46716 (-)
Type: CAZyme
Location: 44530 - 46716 (-)
Gene ID: Rep_990_c_28_36
Type: pfam
Location: 46966 - 48069 (-)
Type: pfam
Location: 46966 - 48069 (-)
Gene ID: Rep_990_c_28_37
Type: TC
Location: 48247 - 48840 (+)
Type: TC
Location: 48247 - 48840 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter chengduensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.