Cluster: Rep_990_CGC35
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_990
- CGC Family ID: CGCFAM_00294
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_990_c_27 | Rep_990_c_27_41 | 40656 | 41369 | + | 9.B.120.1.1 |
| TF | Rep_990_c_27 | Rep_990_c_27_42 | 41595 | 41954 | - | GerE |
| TC | Rep_990_c_27 | Rep_990_c_27_43 | 42795 | 45233 | + | 1.B.55.1.1 |
| CAZyme | Rep_990_c_27 | Rep_990_c_27_44 | 45242 | 47179 | + | CE4 | GH153 | GH153 |
| CAZyme | Rep_990_c_27 | Rep_990_c_27_45 | 47172 | 48503 | + | GT2 |
Gene ID: Rep_990_c_27_41
Type: TC
Location: 40656 - 41369 (+)
Type: TC
Location: 40656 - 41369 (+)
Gene ID: Rep_990_c_27_42
Type: TF
Location: 41595 - 41954 (-)
Type: TF
Location: 41595 - 41954 (-)
Gene ID: Rep_990_c_27_43
Type: TC
Location: 42795 - 45233 (+)
Type: TC
Location: 42795 - 45233 (+)
Gene ID: Rep_990_c_27_44
Type: CAZyme
Location: 45242 - 47179 (+)
Type: CAZyme
Location: 45242 - 47179 (+)
Gene ID: Rep_990_c_27_45
Type: CAZyme
Location: 47172 - 48503 (+)
Type: CAZyme
Location: 47172 - 48503 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter chengduensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_990_c_27_42 | vegetarian > omnivore | 1.09458 | 0.03781 |
| Rep_990_c_27_42 | vegetarian > vegan | 1.24826 | 0.04130 |
| Rep_990_c_27_43 | vegetarian > omnivore | 1.56450 | 0.03781 |
| Rep_990_c_27_44 | vegetarian > omnivore | 1.35250 | 0.03781 |
| Rep_990_c_27_45 | vegetarian > omnivore | 1.80242 | 0.03781 |
| Rep_990_c_27_45 | vegetarian > vegan | 1.00383 | 0.04130 |