Cluster: Rep_990_CGC32
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_990
- CGC Family ID: CGCFAM_03801
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_990_c_24 | Rep_990_c_24_10 | 9534 | 10313 | - | 3.A.1.14.16 |
| TC | Rep_990_c_24 | Rep_990_c_24_11 | 10306 | 10965 | - | 3.A.1.14.5 |
| TC | Rep_990_c_24 | Rep_990_c_24_12 | 10981 | 11298 | - | 3.A.1.14.5 |
| TC | Rep_990_c_24 | Rep_990_c_24_13 | 11298 | 12119 | - | 3.A.1.14.16 |
| pfam | Rep_990_c_24 | Rep_990_c_24_14 | 12116 | 13144 | - | HemS | HemS | ChuX_HutX | ChuX_HutX |
| TC | Rep_990_c_24 | Rep_990_c_24_15 | 13180 | 15159 | - | 1.B.14.2.14 |
| pfam | Rep_990_c_24 | Rep_990_c_24_16 | 15624 | 16670 | - | DAHP_synth_1 |
| pfam | Rep_990_c_24 | Rep_990_c_24_17 | 16823 | 17656 | - | Kinase-PPPase |
| TC | Rep_990_c_24 | Rep_990_c_24_18 | 17992 | 20370 | + | 8.A.7.1.4 |
| TC | Rep_990_c_24 | Rep_990_c_24_19 | 20604 | 22004 | + | 2.A.2.3.5 |
| CAZyme | Rep_990_c_24 | Rep_990_c_24_20 | 22008 | 24383 | + | GH3 |
| TC | Rep_990_c_24 | Rep_990_c_24_21 | 24706 | 25821 | - | 2.A.86.2.1 |
Gene ID: Rep_990_c_24_10
Type: TC
Location: 9534 - 10313 (-)
Type: TC
Location: 9534 - 10313 (-)
Gene ID: Rep_990_c_24_11
Type: TC
Location: 10306 - 10965 (-)
Type: TC
Location: 10306 - 10965 (-)
Gene ID: Rep_990_c_24_12
Type: TC
Location: 10981 - 11298 (-)
Type: TC
Location: 10981 - 11298 (-)
Gene ID: Rep_990_c_24_13
Type: TC
Location: 11298 - 12119 (-)
Type: TC
Location: 11298 - 12119 (-)
Gene ID: Rep_990_c_24_14
Type: pfam
Location: 12116 - 13144 (-)
Type: pfam
Location: 12116 - 13144 (-)
Gene ID: Rep_990_c_24_15
Type: TC
Location: 13180 - 15159 (-)
Type: TC
Location: 13180 - 15159 (-)
Gene ID: Rep_990_c_24_16
Type: pfam
Location: 15624 - 16670 (-)
Type: pfam
Location: 15624 - 16670 (-)
Gene ID: Rep_990_c_24_17
Type: pfam
Location: 16823 - 17656 (-)
Type: pfam
Location: 16823 - 17656 (-)
Gene ID: Rep_990_c_24_18
Type: TC
Location: 17992 - 20370 (+)
Type: TC
Location: 17992 - 20370 (+)
Gene ID: Rep_990_c_24_19
Type: TC
Location: 20604 - 22004 (+)
Type: TC
Location: 20604 - 22004 (+)
Gene ID: Rep_990_c_24_20
Type: CAZyme
Location: 22008 - 24383 (+)
Type: CAZyme
Location: 22008 - 24383 (+)
Gene ID: Rep_990_c_24_21
Type: TC
Location: 24706 - 25821 (-)
Type: TC
Location: 24706 - 25821 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter chengduensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_990_c_24_16 | vegetarian > vegan | 1.76840 | 0.04130 |
| Rep_990_c_24_20 | vegetarian > omnivore | 1.37506 | 0.03781 |
| Rep_990_c_24_20 | vegetarian > vegan | 1.82657 | 0.04130 |
| Rep_990_c_24_21 | vegetarian > omnivore | 1.55507 | 0.03781 |
| Rep_990_c_24_21 | vegetarian > vegan | 2.35060 | 0.01863 |