Cluster: Rep_990_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_990
- CGC Family ID: CGCFAM_09880
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_990_c_0 | Rep_990_c_0_111 | 114545 | 116416 | + | 3.A.23.2.1 |
| pfam | Rep_990_c_0 | Rep_990_c_0_112 | 116413 | 117456 | + | T6SS_TssG |
| TC | Rep_990_c_0 | Rep_990_c_0_113 | 117495 | 120110 | + | 3.A.23.2.1 |
| STP | Rep_990_c_0 | Rep_990_c_0_114 | 120135 | 121556 | + | Pkinase |
| NULL(UNKNOWN) | Rep_990_c_0 | Rep_990_c_0_115 | 121694 | 122197 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_990_c_0 | Rep_990_c_0_116 | 122262 | 124973 | + | GH73 |
Gene ID: Rep_990_c_0_111
Type: TC
Location: 114545 - 116416 (+)
Type: TC
Location: 114545 - 116416 (+)
Gene ID: Rep_990_c_0_112
Type: pfam
Location: 116413 - 117456 (+)
Type: pfam
Location: 116413 - 117456 (+)
Gene ID: Rep_990_c_0_113
Type: TC
Location: 117495 - 120110 (+)
Type: TC
Location: 117495 - 120110 (+)
Gene ID: Rep_990_c_0_114
Type: STP
Location: 120135 - 121556 (+)
Type: STP
Location: 120135 - 121556 (+)
Gene ID: Rep_990_c_0_115
Type:
Location: 121694 - 122197 (+)
Type:
Location: 121694 - 122197 (+)
Gene ID: Rep_990_c_0_116
Type: CAZyme
Location: 122262 - 124973 (+)
Type: CAZyme
Location: 122262 - 124973 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter chengduensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_990_c_0_111 | vegetarian > omnivore | 1.02008 | 0.03781 |
| Rep_990_c_0_112 | vegetarian > omnivore | 1.34741 | 0.03781 |
| Rep_990_c_0_116 | vegetarian > omnivore | 1.22328 | 0.03781 |