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Cluster: Rep_990_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_990_c_20 Rep_990_c_20_27 28617 29072 + 5.A.3.11.1
STP Rep_990_c_20 Rep_990_c_20_28 29077 30333 - Aminotran_1_2
CAZyme Rep_990_c_20 Rep_990_c_20_29 30523 32553 - GH13_19
CAZyme Rep_990_c_20 Rep_990_c_20_30 33121 33693 + GH73
TF Rep_990_c_20 Rep_990_c_20_31 33733 34911 - HTH_AraC | HTH_AraC
TC Rep_990_c_20 Rep_990_c_20_32 34945 36126 - 3.A.1.2.4
TC Rep_990_c_20 Rep_990_c_20_33 36104 37645 - 3.A.1.2.4
TC Rep_990_c_20 Rep_990_c_20_34 37718 38710 - 3.A.1.2.4
Gene ID: Rep_990_c_20_27
Type: TC
Location: 28617 - 29072 (+)
Gene ID: Rep_990_c_20_28
Type: STP
Location: 29077 - 30333 (-)
Gene ID: Rep_990_c_20_29
Type: CAZyme
Location: 30523 - 32553 (-)
Gene ID: Rep_990_c_20_30
Type: CAZyme
Location: 33121 - 33693 (+)
Gene ID: Rep_990_c_20_31
Type: TF
Location: 33733 - 34911 (-)
Gene ID: Rep_990_c_20_32
Type: TC
Location: 34945 - 36126 (-)
Gene ID: Rep_990_c_20_33
Type: TC
Location: 36104 - 37645 (-)
Gene ID: Rep_990_c_20_34
Type: TC
Location: 37718 - 38710 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_990_c_20_27 vegetarian > omnivore 4.87283 0.02213
Rep_990_c_20_27 vegetarian > vegan 2.52172 0.04130

🧭 Explore Read Mapping of CGC

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