Cluster: Rep_990_CGC20
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_990
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_990_c_14 | Rep_990_c_14_17 | 20584 | 22407 | - | CBM73 | GH19 |
| CAZyme | Rep_990_c_14 | Rep_990_c_14_18 | 22541 | 22981 | - | GH23 |
| CAZyme | Rep_990_c_14 | Rep_990_c_14_19 | 23085 | 25799 | - | GH18 |
| TC | Rep_990_c_14 | Rep_990_c_14_20 | 26054 | 26851 | - | 3.A.15.2.1 |
| pfam | Rep_990_c_14 | Rep_990_c_14_21 | 26848 | 27333 | - | T2SSM |
| pfam | Rep_990_c_14 | Rep_990_c_14_22 | 27330 | 28463 | - | T2SSL | GspL_C |
| TC | Rep_990_c_14 | Rep_990_c_14_23 | 28479 | 29489 | - | 3.A.15.1.1 |
| TC | Rep_990_c_14 | Rep_990_c_14_24 | 29486 | 30124 | - | 3.A.15.1.1 |
| TC | Rep_990_c_14 | Rep_990_c_14_25 | 30121 | 30501 | - | 3.A.15.1.1 |
| TC | Rep_990_c_14 | Rep_990_c_14_26 | 30494 | 30979 | - | 3.A.15.1.1 |
| TC | Rep_990_c_14 | Rep_990_c_14_27 | 30979 | 31428 | - | 3.A.15.1.1 |
| TC | Rep_990_c_14 | Rep_990_c_14_28 | 31432 | 32640 | - | 3.A.15.1.1 |
| TC | Rep_990_c_14 | Rep_990_c_14_29 | 32640 | 34118 | - | 3.A.15.1.1 |
| TC | Rep_990_c_14 | Rep_990_c_14_30 | 34133 | 36064 | - | 1.B.22.1.1 |
Gene ID: Rep_990_c_14_17
Type: CAZyme
Location: 20584 - 22407 (-)
Type: CAZyme
Location: 20584 - 22407 (-)
Gene ID: Rep_990_c_14_18
Type: CAZyme
Location: 22541 - 22981 (-)
Type: CAZyme
Location: 22541 - 22981 (-)
Gene ID: Rep_990_c_14_19
Type: CAZyme
Location: 23085 - 25799 (-)
Type: CAZyme
Location: 23085 - 25799 (-)
Gene ID: Rep_990_c_14_20
Type: TC
Location: 26054 - 26851 (-)
Type: TC
Location: 26054 - 26851 (-)
Gene ID: Rep_990_c_14_21
Type: pfam
Location: 26848 - 27333 (-)
Type: pfam
Location: 26848 - 27333 (-)
Gene ID: Rep_990_c_14_22
Type: pfam
Location: 27330 - 28463 (-)
Type: pfam
Location: 27330 - 28463 (-)
Gene ID: Rep_990_c_14_23
Type: TC
Location: 28479 - 29489 (-)
Type: TC
Location: 28479 - 29489 (-)
Gene ID: Rep_990_c_14_24
Type: TC
Location: 29486 - 30124 (-)
Type: TC
Location: 29486 - 30124 (-)
Gene ID: Rep_990_c_14_25
Type: TC
Location: 30121 - 30501 (-)
Type: TC
Location: 30121 - 30501 (-)
Gene ID: Rep_990_c_14_26
Type: TC
Location: 30494 - 30979 (-)
Type: TC
Location: 30494 - 30979 (-)
Gene ID: Rep_990_c_14_27
Type: TC
Location: 30979 - 31428 (-)
Type: TC
Location: 30979 - 31428 (-)
Gene ID: Rep_990_c_14_28
Type: TC
Location: 31432 - 32640 (-)
Type: TC
Location: 31432 - 32640 (-)
Gene ID: Rep_990_c_14_29
Type: TC
Location: 32640 - 34118 (-)
Type: TC
Location: 32640 - 34118 (-)
Gene ID: Rep_990_c_14_30
Type: TC
Location: 34133 - 36064 (-)
Type: TC
Location: 34133 - 36064 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter chengduensis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_990_c_14_17 | vegetarian > omnivore | 1.26146 | 0.03781 |
| Rep_990_c_14_18 | vegetarian > vegan | 1.49321 | 0.04130 |
| Rep_990_c_14_19 | vegetarian > omnivore | 2.11161 | 0.03781 |
| Rep_990_c_14_19 | vegetarian > vegan | 1.40604 | 0.04130 |
| Rep_990_c_14_20 | vegetarian > omnivore | 1.17200 | 0.03781 |
| Rep_990_c_14_20 | vegetarian > vegan | 2.08161 | 0.04130 |
| Rep_990_c_14_21 | vegetarian > omnivore | 1.04540 | 0.03781 |
| Rep_990_c_14_21 | vegetarian > vegan | 2.68249 | 0.04130 |
| Rep_990_c_14_22 | vegetarian > omnivore | 1.96507 | 0.03781 |
| Rep_990_c_14_23 | vegetarian > omnivore | 2.93764 | 0.03781 |
| Rep_990_c_14_25 | vegetarian > omnivore | 2.34315 | 0.03781 |
| Rep_990_c_14_26 | vegetarian > omnivore | 2.71337 | 0.03781 |
| Rep_990_c_14_27 | vegetarian > omnivore | 3.37716 | 0.03781 |
| Rep_990_c_14_28 | vegetarian > omnivore | 1.49743 | 0.03781 |
| Rep_990_c_14_29 | vegetarian > vegan | 1.62739 | 0.04130 |
| Rep_990_c_14_30 | vegetarian > omnivore | 1.41408 | 0.03781 |