dbCAN HGM

Cluster: Rep_990_CGC2

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_990_c_0	Rep_990_c_0_74	74132	75865	-	2.A.36.6.11
peptidase	Rep_990_c_0	Rep_990_c_0_75	75963	76877	-	S66.002
CAZyme	Rep_990_c_0	Rep_990_c_0_76	76985	77596	+	GH23
pfam	Rep_990_c_0	Rep_990_c_0_77	77634	78365	-	PilZ \| PilZN
TC	Rep_990_c_0	Rep_990_c_0_78	78573	78827	+	1.E.43.1.1
TC	Rep_990_c_0	Rep_990_c_0_79	78940	81042	+	1.B.14.1.2
CAZyme	Rep_990_c_0	Rep_990_c_0_80	81125	82810	-	GH37
TC	Rep_990_c_0	Rep_990_c_0_81	83231	84571	+	1.B.15.1.1
TF	Rep_990_c_0	Rep_990_c_0_82	84586	85542	-	HTH_AraC \| HTH_AraC
TC	Rep_990_c_0	Rep_990_c_0_83	85658	86845	+	2.A.1.2.26

Gene ID: Rep_990_c_0_74
Type: TC
Location: 74132 - 75865 (-)

Gene ID: Rep_990_c_0_75
Type: peptidase
Location: 75963 - 76877 (-)

Gene ID: Rep_990_c_0_76
Type: CAZyme
Location: 76985 - 77596 (+)

Gene ID: Rep_990_c_0_77
Type: pfam
Location: 77634 - 78365 (-)

Gene ID: Rep_990_c_0_78
Type: TC
Location: 78573 - 78827 (+)

Gene ID: Rep_990_c_0_79
Type: TC
Location: 78940 - 81042 (+)

Gene ID: Rep_990_c_0_80
Type: CAZyme
Location: 81125 - 82810 (-)

Gene ID: Rep_990_c_0_81
Type: TC
Location: 83231 - 84571 (+)

Gene ID: Rep_990_c_0_82
Type: TF
Location: 84586 - 85542 (-)

Gene ID: Rep_990_c_0_83
Type: TC
Location: 85658 - 86845 (+)

Taxonomic Lineage

Domain

→

Phylum

→

Class

→

Order

→

Family

→

Genus

→

Species

Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Gene ID	Condition Pair	log2FC	FDR P-value
Rep_990_c_0_75	vegetarian > omnivore	1.50797	0.03781
Rep_990_c_0_75	vegetarian > vegan	1.48930	0.04130
Rep_990_c_0_76	vegetarian > vegan	1.65323	0.04130
Rep_990_c_0_77	vegetarian > omnivore	1.70244	0.03781
Rep_990_c_0_77	vegetarian > vegan	1.77850	0.04130
Rep_990_c_0_80	vegetarian > omnivore	1.17318	0.03781