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Cluster: Rep_990_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_990_c_13 Rep_990_c_13_47 55247 56230 + GT2
pfam Rep_990_c_13 Rep_990_c_13_48 56227 58209 + Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
pfam Rep_990_c_13 Rep_990_c_13_49 58206 59108 + Polysacc_deac_1
CAZyme Rep_990_c_13 Rep_990_c_13_50 59105 60760 + GT83
TC Rep_990_c_13 Rep_990_c_13_51 60760 61095 + 2.A.7.22.2
TC Rep_990_c_13 Rep_990_c_13_52 61092 61496 + 2.A.7.22.1
pfam Rep_990_c_13 Rep_990_c_13_53 61429 62049 - ACPS
TC Rep_990_c_13 Rep_990_c_13_54 62152 63201 - 2.A.86.1.2
TC Rep_990_c_13 Rep_990_c_13_55 63347 64564 + 2.A.1.46.7
pfam Rep_990_c_13 Rep_990_c_13_56 64568 65125 - DcrB
TC Rep_990_c_13 Rep_990_c_13_57 65198 65863 - 2.A.88.8.6
Gene ID: Rep_990_c_13_47
Type: CAZyme
Location: 55247 - 56230 (+)
Gene ID: Rep_990_c_13_48
Type: pfam
Location: 56227 - 58209 (+)
Gene ID: Rep_990_c_13_49
Type: pfam
Location: 58206 - 59108 (+)
Gene ID: Rep_990_c_13_50
Type: CAZyme
Location: 59105 - 60760 (+)
Gene ID: Rep_990_c_13_51
Type: TC
Location: 60760 - 61095 (+)
Gene ID: Rep_990_c_13_52
Type: TC
Location: 61092 - 61496 (+)
Gene ID: Rep_990_c_13_53
Type: pfam
Location: 61429 - 62049 (-)
Gene ID: Rep_990_c_13_54
Type: TC
Location: 62152 - 63201 (-)
Gene ID: Rep_990_c_13_55
Type: TC
Location: 63347 - 64564 (+)
Gene ID: Rep_990_c_13_56
Type: pfam
Location: 64568 - 65125 (-)
Gene ID: Rep_990_c_13_57
Type: TC
Location: 65198 - 65863 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_990_c_13_47 vegetarian > omnivore 1.96354 0.03781

🧭 Explore Read Mapping of CGC

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