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Cluster: Rep_990_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_990_c_10 Rep_990_c_10_46 49228 53004 - 9.B.22.1.2
TC Rep_990_c_10 Rep_990_c_10_47 53001 54734 - 1.B.33.2.4
pfam Rep_990_c_10 Rep_990_c_10_48 54959 55600 + PMSR
TF Rep_990_c_10 Rep_990_c_10_49 55601 56659 - LacI
CAZyme Rep_990_c_10 Rep_990_c_10_50 56853 58004 + GH177
CAZyme Rep_990_c_10 Rep_990_c_10_51 58020 59204 + GH179
pfam Rep_990_c_10 Rep_990_c_10_52 59201 60268 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
pfam Rep_990_c_10 Rep_990_c_10_53 60281 61300 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
TC Rep_990_c_10 Rep_990_c_10_54 61380 62927 + 2.A.2.5.2
pfam Rep_990_c_10 Rep_990_c_10_55 63783 65186 - PAAR_motif
NULL(UNKNOWN) Rep_990_c_10 Rep_990_c_10_56 65197 65802 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_990_c_10 Rep_990_c_10_57 66654 67991 + 9.A.40.2.2
Gene ID: Rep_990_c_10_46
Type: TC
Location: 49228 - 53004 (-)
Gene ID: Rep_990_c_10_47
Type: TC
Location: 53001 - 54734 (-)
Gene ID: Rep_990_c_10_48
Type: pfam
Location: 54959 - 55600 (+)
Gene ID: Rep_990_c_10_49
Type: TF
Location: 55601 - 56659 (-)
Gene ID: Rep_990_c_10_50
Type: CAZyme
Location: 56853 - 58004 (+)
Gene ID: Rep_990_c_10_51
Type: CAZyme
Location: 58020 - 59204 (+)
Gene ID: Rep_990_c_10_52
Type: pfam
Location: 59201 - 60268 (+)
Gene ID: Rep_990_c_10_53
Type: pfam
Location: 60281 - 61300 (+)
Gene ID: Rep_990_c_10_54
Type: TC
Location: 61380 - 62927 (+)
Gene ID: Rep_990_c_10_55
Type: pfam
Location: 63783 - 65186 (-)
Gene ID: Rep_990_c_10_56
Type:
Location: 65197 - 65802 (-)
Gene ID: Rep_990_c_10_57
Type: TC
Location: 66654 - 67991 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_990_c_10_51 vegetarian > omnivore 1.09918 0.03781
Rep_990_c_10_51 vegetarian > vegan 3.84527 0.04130

🧭 Explore Read Mapping of CGC

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