dbCAN HGM

Cluster: Rep_990_CGC12

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	Rep_990_c_6	Rep_990_c_6_16	15039	15872	+	2.A.7.31.3
TC	Rep_990_c_6	Rep_990_c_6_17	16075	17232	+	2.A.1.2.9
CAZyme	Rep_990_c_6	Rep_990_c_6_18	17135	18223	-	GH5
TF	Rep_990_c_6	Rep_990_c_6_19	18308	19234	-	HTH_1
TC	Rep_990_c_6	Rep_990_c_6_20	19439	20776	+	2.A.8.1.5
STP	Rep_990_c_6	Rep_990_c_6_21	20794	22080	+	PALP
pfam	Rep_990_c_6	Rep_990_c_6_22	22115	22462	-	DUF202
TC	Rep_990_c_6	Rep_990_c_6_23	22452	22799	-	9.B.51.1.1
CAZyme	Rep_990_c_6	Rep_990_c_6_24	22892	24214	-	GH4
TC	Rep_990_c_6	Rep_990_c_6_25	24211	25833	-	4.A.1.1.10
TF	Rep_990_c_6	Rep_990_c_6_26	26055	26801	+	GntR
TC	Rep_990_c_6	Rep_990_c_6_27	26769	28430	-	2.A.81.1.5

Gene ID: Rep_990_c_6_16
Type: TC
Location: 15039 - 15872 (+)

Gene ID: Rep_990_c_6_17
Type: TC
Location: 16075 - 17232 (+)

Gene ID: Rep_990_c_6_18
Type: CAZyme
Location: 17135 - 18223 (-)

Gene ID: Rep_990_c_6_19
Type: TF
Location: 18308 - 19234 (-)

Gene ID: Rep_990_c_6_20
Type: TC
Location: 19439 - 20776 (+)

Gene ID: Rep_990_c_6_21
Type: STP
Location: 20794 - 22080 (+)

Gene ID: Rep_990_c_6_22
Type: pfam
Location: 22115 - 22462 (-)

Gene ID: Rep_990_c_6_23
Type: TC
Location: 22452 - 22799 (-)

Gene ID: Rep_990_c_6_24
Type: CAZyme
Location: 22892 - 24214 (-)

Gene ID: Rep_990_c_6_25
Type: TC
Location: 24211 - 25833 (-)

Gene ID: Rep_990_c_6_26
Type: TF
Location: 26055 - 26801 (+)

Gene ID: Rep_990_c_6_27
Type: TC
Location: 26769 - 28430 (-)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
Rep_990_c_6_16	vegetarian > omnivore	1.49818	0.03781
Rep_990_c_6_20	vegetarian > omnivore	1.15943	0.03781
Rep_990_c_6_21	vegetarian > omnivore	1.47796	0.01499
Rep_990_c_6_22	vegetarian > omnivore	1.74120	0.03781