Cluster: Rep_98_CGC8
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_98
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_98_c_11 | Rep_98_c_11_17 | 20221 | 21348 | - | GT2 |
| pfam | Rep_98_c_11 | Rep_98_c_11_18 | 21349 | 22641 | - | tRNA-synt_1b | S4 | SYY_C-terminal |
| pfam | Rep_98_c_11 | Rep_98_c_11_19 | 22803 | 23903 | - | RF-1 | PCRF |
| TC | Rep_98_c_11 | Rep_98_c_11_20 | 23928 | 25778 | - | 4.C.1.1.14 |
| TC | Rep_98_c_11 | Rep_98_c_11_21 | 25820 | 27880 | - | 3.A.6.1.1 |
Gene ID: Rep_98_c_11_17
Type: CAZyme
Location: 20221 - 21348 (-)
Type: CAZyme
Location: 20221 - 21348 (-)
Gene ID: Rep_98_c_11_18
Type: pfam
Location: 21349 - 22641 (-)
Type: pfam
Location: 21349 - 22641 (-)
Gene ID: Rep_98_c_11_19
Type: pfam
Location: 22803 - 23903 (-)
Type: pfam
Location: 22803 - 23903 (-)
Gene ID: Rep_98_c_11_20
Type: TC
Location: 23928 - 25778 (-)
Type: TC
Location: 23928 - 25778 (-)
Gene ID: Rep_98_c_11_21
Type: TC
Location: 25820 - 27880 (-)
Type: TC
Location: 25820 - 27880 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas
Species
Porphyromonas sp902489445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.