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Cluster: Rep_988_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_988_c_6 Rep_988_c_6_101 106885 108333 + 3.D.7.2.3
STP Rep_988_c_6 Rep_988_c_6_102 108330 109463 + Pyr_redox_2
TC Rep_988_c_6 Rep_988_c_6_103 109914 110936 - 2.A.52.1.1
pfam Rep_988_c_6 Rep_988_c_6_104 110938 113154 - Acylphosphatase | Sua5_yciO_yrdC | zf-HYPF | zf-HYPF | HypF_C | HypF_C_2
TC Rep_988_c_6 Rep_988_c_6_105 113160 113705 - 5.A.3.11.1
TF Rep_988_c_6 Rep_988_c_6_106 113840 114853 - LacI
TC Rep_988_c_6 Rep_988_c_6_107 115068 116519 + 4.A.1.2.3
CAZyme Rep_988_c_6 Rep_988_c_6_108 116538 117962 + GH1
peptidase Rep_988_c_6 Rep_988_c_6_109 118071 118556 - A31.003
pfam Rep_988_c_6 Rep_988_c_6_110 118549 118959 - HycH
TC Rep_988_c_6 Rep_988_c_6_111 118956 119723 - 3.D.1.9.2
TC Rep_988_c_6 Rep_988_c_6_112 119723 120265 - 3.D.1.9.2
TC Rep_988_c_6 Rep_988_c_6_113 120275 121984 - 3.D.1.9.2
TC Rep_988_c_6 Rep_988_c_6_114 122000 122923 - 3.D.1.9.2
TC Rep_988_c_6 Rep_988_c_6_115 122925 124739 - 3.D.1.9.2
TC Rep_988_c_6 Rep_988_c_6_116 124736 125344 - 3.D.1.9.2
Gene ID: Rep_988_c_6_101
Type: TC
Location: 106885 - 108333 (+)
Gene ID: Rep_988_c_6_102
Type: STP
Location: 108330 - 109463 (+)
Gene ID: Rep_988_c_6_103
Type: TC
Location: 109914 - 110936 (-)
Gene ID: Rep_988_c_6_104
Type: pfam
Location: 110938 - 113154 (-)
Gene ID: Rep_988_c_6_105
Type: TC
Location: 113160 - 113705 (-)
Gene ID: Rep_988_c_6_106
Type: TF
Location: 113840 - 114853 (-)
Gene ID: Rep_988_c_6_107
Type: TC
Location: 115068 - 116519 (+)
Gene ID: Rep_988_c_6_108
Type: CAZyme
Location: 116538 - 117962 (+)
Gene ID: Rep_988_c_6_109
Type: peptidase
Location: 118071 - 118556 (-)
Gene ID: Rep_988_c_6_110
Type: pfam
Location: 118549 - 118959 (-)
Gene ID: Rep_988_c_6_111
Type: TC
Location: 118956 - 119723 (-)
Gene ID: Rep_988_c_6_112
Type: TC
Location: 119723 - 120265 (-)
Gene ID: Rep_988_c_6_113
Type: TC
Location: 120275 - 121984 (-)
Gene ID: Rep_988_c_6_114
Type: TC
Location: 122000 - 122923 (-)
Gene ID: Rep_988_c_6_115
Type: TC
Location: 122925 - 124739 (-)
Gene ID: Rep_988_c_6_116
Type: TC
Location: 124736 - 125344 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_988_c_6_103 vegetarian > omnivore 1.07210 0.03403
Rep_988_c_6_104 vegetarian > omnivore 1.45130 0.03403
Rep_988_c_6_104 vegetarian > vegan 1.19292 0.04151
Rep_988_c_6_109 vegetarian > omnivore 2.28838 0.01465

🧭 Explore Read Mapping of CGC

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