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Cluster: Rep_988_CGC54

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_988_c_17 Rep_988_c_17_188 199005 199745 + 9.B.99.1.1
NULL(UNKNOWN) Rep_988_c_17 Rep_988_c_17_189 200035 200235 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_988_c_17 Rep_988_c_17_190 200224 201300 - HSDR_N | HSDR_N_2
TC Rep_988_c_17 Rep_988_c_17_191 202090 202545 + 3.D.1.9.2
STP Rep_988_c_17 Rep_988_c_17_192 202550 203806 - Aminotran_1_2
CAZyme Rep_988_c_17 Rep_988_c_17_193 204047 206077 - GH13_19
CAZyme Rep_988_c_17 Rep_988_c_17_194 206644 207216 + GH73
TF Rep_988_c_17 Rep_988_c_17_195 207256 208434 - HTH_AraC | HTH_AraC
TC Rep_988_c_17 Rep_988_c_17_196 208468 209649 - 3.A.1.2.4
TC Rep_988_c_17 Rep_988_c_17_197 209627 211168 - 3.A.1.2.4
TC Rep_988_c_17 Rep_988_c_17_198 211241 212233 - 3.A.1.2.4
Gene ID: Rep_988_c_17_188
Type: TC
Location: 199005 - 199745 (+)
Gene ID: Rep_988_c_17_189
Type:
Location: 200035 - 200235 (+)
Gene ID: Rep_988_c_17_190
Type: pfam
Location: 200224 - 201300 (-)
Gene ID: Rep_988_c_17_191
Type: TC
Location: 202090 - 202545 (+)
Gene ID: Rep_988_c_17_192
Type: STP
Location: 202550 - 203806 (-)
Gene ID: Rep_988_c_17_193
Type: CAZyme
Location: 204047 - 206077 (-)
Gene ID: Rep_988_c_17_194
Type: CAZyme
Location: 206644 - 207216 (+)
Gene ID: Rep_988_c_17_195
Type: TF
Location: 207256 - 208434 (-)
Gene ID: Rep_988_c_17_196
Type: TC
Location: 208468 - 209649 (-)
Gene ID: Rep_988_c_17_197
Type: TC
Location: 209627 - 211168 (-)
Gene ID: Rep_988_c_17_198
Type: TC
Location: 211241 - 212233 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_988_c_17_191 vegetarian > omnivore 2.17697 0.03403

🧭 Explore Read Mapping of CGC

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