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Cluster: Rep_988_CGC51

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_988_c_17 Rep_988_c_17_79 82719 84038 + 2.A.1.4.4
TC Rep_988_c_17 Rep_988_c_17_80 84179 85570 + 2.A.1.4.1
pfam Rep_988_c_17 Rep_988_c_17_81 85749 86201 + DUF1198
TF Rep_988_c_17 Rep_988_c_17_82 86198 87118 - HTH_1
TC Rep_988_c_17 Rep_988_c_17_83 87455 88675 + 2.A.1.2.18
TC Rep_988_c_17 Rep_988_c_17_84 88769 89767 - 8.A.5.1.6
TC Rep_988_c_17 Rep_988_c_17_85 89975 91165 + 2.A.1.2.26
TC Rep_988_c_17 Rep_988_c_17_86 91280 92185 - 2.A.7.3.12
pfam Rep_988_c_17 Rep_988_c_17_87 92320 93699 - LamB
TC Rep_988_c_17 Rep_988_c_17_88 93836 94141 - 4.A.3.2.1
CAZyme Rep_988_c_17 Rep_988_c_17_89 94144 95520 - GH1
TC Rep_988_c_17 Rep_988_c_17_90 95538 96863 - 4.A.3.2.6
TC Rep_988_c_17 Rep_988_c_17_91 96875 97189 - 4.A.3.2.6
TF Rep_988_c_17 Rep_988_c_17_92 97483 98433 + LacI
NULL(UNKNOWN) Rep_988_c_17 Rep_988_c_17_93 98481 98777 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_988_c_17 Rep_988_c_17_94 98898 100262 - 2.A.6.2.19
TC Rep_988_c_17 Rep_988_c_17_95 100262 103372 - 2.A.6.2.19
TC Rep_988_c_17 Rep_988_c_17_96 103372 104493 - 2.A.6.2.19
STP Rep_988_c_17 Rep_988_c_17_97 104642 105211 - TetR_N
pfam Rep_988_c_17 Rep_988_c_17_98 105398 105817 + Acetyltransf_1 | Acetyltransf_7 | Acetyltransf_10
TC Rep_988_c_17 Rep_988_c_17_99 105965 106765 + 3.A.1.24.1
Gene ID: Rep_988_c_17_79
Type: TC
Location: 82719 - 84038 (+)
Gene ID: Rep_988_c_17_80
Type: TC
Location: 84179 - 85570 (+)
Gene ID: Rep_988_c_17_81
Type: pfam
Location: 85749 - 86201 (+)
Gene ID: Rep_988_c_17_82
Type: TF
Location: 86198 - 87118 (-)
Gene ID: Rep_988_c_17_83
Type: TC
Location: 87455 - 88675 (+)
Gene ID: Rep_988_c_17_84
Type: TC
Location: 88769 - 89767 (-)
Gene ID: Rep_988_c_17_85
Type: TC
Location: 89975 - 91165 (+)
Gene ID: Rep_988_c_17_86
Type: TC
Location: 91280 - 92185 (-)
Gene ID: Rep_988_c_17_87
Type: pfam
Location: 92320 - 93699 (-)
Gene ID: Rep_988_c_17_88
Type: TC
Location: 93836 - 94141 (-)
Gene ID: Rep_988_c_17_89
Type: CAZyme
Location: 94144 - 95520 (-)
Gene ID: Rep_988_c_17_90
Type: TC
Location: 95538 - 96863 (-)
Gene ID: Rep_988_c_17_91
Type: TC
Location: 96875 - 97189 (-)
Gene ID: Rep_988_c_17_92
Type: TF
Location: 97483 - 98433 (+)
Gene ID: Rep_988_c_17_93
Type:
Location: 98481 - 98777 (-)
Gene ID: Rep_988_c_17_94
Type: TC
Location: 98898 - 100262 (-)
Gene ID: Rep_988_c_17_95
Type: TC
Location: 100262 - 103372 (-)
Gene ID: Rep_988_c_17_96
Type: TC
Location: 103372 - 104493 (-)
Gene ID: Rep_988_c_17_97
Type: STP
Location: 104642 - 105211 (-)
Gene ID: Rep_988_c_17_98
Type: pfam
Location: 105398 - 105817 (+)
Gene ID: Rep_988_c_17_99
Type: TC
Location: 105965 - 106765 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_988_c_17_86 vegetarian > omnivore 1.15696 0.03403
Rep_988_c_17_87 vegetarian > omnivore 1.18198 0.03403
Rep_988_c_17_87 vegetarian > vegan 1.54007 0.04151
Rep_988_c_17_88 vegetarian > omnivore 1.91037 0.03322
Rep_988_c_17_89 vegetarian > vegan 1.13989 0.04151
Rep_988_c_17_90 vegetarian > omnivore 1.57876 0.03339
Rep_988_c_17_90 vegetarian > vegan 1.09150 0.04151
Rep_988_c_17_91 vegetarian > omnivore 1.66246 0.03403
Rep_988_c_17_92 vegetarian > omnivore 1.70332 0.03033
Rep_988_c_17_92 vegetarian > vegan 1.51622 0.04151
Rep_988_c_17_94 vegetarian > omnivore 1.34437 0.03403
Rep_988_c_17_94 vegetarian > vegan 1.32521 0.04151
Rep_988_c_17_97 vegetarian > vegan 1.16053 0.04151
Rep_988_c_17_98 vegetarian > omnivore 3.41518 0.03403

🧭 Explore Read Mapping of CGC

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