Cluster: Rep_988_CGC5
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_988
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_988_c_2 | Rep_988_c_2_25 | 27855 | 28490 | - | 5.A.3.2.1 |
| TC | Rep_988_c_2 | Rep_988_c_2_26 | 28487 | 29389 | - | 5.A.3.2.1 |
| TC | Rep_988_c_2 | Rep_988_c_2_27 | 29402 | 31816 | - | 5.A.3.2.1 |
| TC | Rep_988_c_2 | Rep_988_c_2_28 | 31865 | 32452 | - | 5.A.3.2.1 |
| pfam | Rep_988_c_2 | Rep_988_c_2_29 | 32826 | 33662 | + | FdhD-NarQ |
| pfam | Rep_988_c_2 | Rep_988_c_2_30 | 33778 | 33990 | + | YdgH_BhsA-like |
| TC | Rep_988_c_2 | Rep_988_c_2_31 | 34030 | 34353 | - | 2.A.78.2.3 |
| TC | Rep_988_c_2 | Rep_988_c_2_32 | 34353 | 35012 | - | 2.A.78.2.3 |
| TF | Rep_988_c_2 | Rep_988_c_2_33 | 35116 | 35664 | + | HTH_3 |
| TF | Rep_988_c_2 | Rep_988_c_2_34 | 35682 | 36677 | + | LacI |
| CAZyme | Rep_988_c_2 | Rep_988_c_2_35 | 36782 | 38905 | + | GH36 |
| TC | Rep_988_c_2 | Rep_988_c_2_36 | 38950 | 40227 | + | 2.A.1.5.4 |
Gene ID: Rep_988_c_2_25
Type: TC
Location: 27855 - 28490 (-)
Type: TC
Location: 27855 - 28490 (-)
Gene ID: Rep_988_c_2_26
Type: TC
Location: 28487 - 29389 (-)
Type: TC
Location: 28487 - 29389 (-)
Gene ID: Rep_988_c_2_27
Type: TC
Location: 29402 - 31816 (-)
Type: TC
Location: 29402 - 31816 (-)
Gene ID: Rep_988_c_2_28
Type: TC
Location: 31865 - 32452 (-)
Type: TC
Location: 31865 - 32452 (-)
Gene ID: Rep_988_c_2_29
Type: pfam
Location: 32826 - 33662 (+)
Type: pfam
Location: 32826 - 33662 (+)
Gene ID: Rep_988_c_2_30
Type: pfam
Location: 33778 - 33990 (+)
Type: pfam
Location: 33778 - 33990 (+)
Gene ID: Rep_988_c_2_31
Type: TC
Location: 34030 - 34353 (-)
Type: TC
Location: 34030 - 34353 (-)
Gene ID: Rep_988_c_2_32
Type: TC
Location: 34353 - 35012 (-)
Type: TC
Location: 34353 - 35012 (-)
Gene ID: Rep_988_c_2_33
Type: TF
Location: 35116 - 35664 (+)
Type: TF
Location: 35116 - 35664 (+)
Gene ID: Rep_988_c_2_34
Type: TF
Location: 35682 - 36677 (+)
Type: TF
Location: 35682 - 36677 (+)
Gene ID: Rep_988_c_2_35
Type: CAZyme
Location: 36782 - 38905 (+)
Type: CAZyme
Location: 36782 - 38905 (+)
Gene ID: Rep_988_c_2_36
Type: TC
Location: 38950 - 40227 (+)
Type: TC
Location: 38950 - 40227 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Enterobacter
Species
Enterobacter cloacae_M
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Rep_988_c_2_30 | vegetarian > omnivore | 1.11179 | 0.03403 |
| Rep_988_c_2_32 | vegetarian > vegan | 1.22929 | 0.04151 |
| Rep_988_c_2_34 | vegetarian > omnivore | 1.27790 | 0.03403 |
| Rep_988_c_2_34 | vegetarian > vegan | 1.22833 | 0.04151 |
| Rep_988_c_2_36 | vegetarian > omnivore | 1.55050 | 0.03403 |