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Cluster: Rep_988_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_988_c_17 Rep_988_c_17_58 62375 64036 + 2.A.81.1.5
TF Rep_988_c_17 Rep_988_c_17_59 64004 64750 - GntR
TC Rep_988_c_17 Rep_988_c_17_60 64972 66594 + 4.A.1.1.10
CAZyme Rep_988_c_17 Rep_988_c_17_61 66591 67913 + GH4
TC Rep_988_c_17 Rep_988_c_17_62 68006 68353 + 9.B.51.1.1
pfam Rep_988_c_17 Rep_988_c_17_63 68343 68690 + DUF202
STP Rep_988_c_17 Rep_988_c_17_64 68773 70059 - PALP
TC Rep_988_c_17 Rep_988_c_17_65 70077 70373 - 2.A.8.1.5
Gene ID: Rep_988_c_17_58
Type: TC
Location: 62375 - 64036 (+)
Gene ID: Rep_988_c_17_59
Type: TF
Location: 64004 - 64750 (-)
Gene ID: Rep_988_c_17_60
Type: TC
Location: 64972 - 66594 (+)
Gene ID: Rep_988_c_17_61
Type: CAZyme
Location: 66591 - 67913 (+)
Gene ID: Rep_988_c_17_62
Type: TC
Location: 68006 - 68353 (+)
Gene ID: Rep_988_c_17_63
Type: pfam
Location: 68343 - 68690 (+)
Gene ID: Rep_988_c_17_64
Type: STP
Location: 68773 - 70059 (-)
Gene ID: Rep_988_c_17_65
Type: TC
Location: 70077 - 70373 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_988_c_17_63 vegetarian > omnivore 1.70861 0.03403
Rep_988_c_17_64 vegetarian > omnivore 1.39615 0.02878

🧭 Explore Read Mapping of CGC

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